View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_11 (Length: 578)
Name: NF1204_low_11
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 215 - 453
Target Start/End: Original strand, 48277475 - 48277713
Alignment:
| Q |
215 |
ctcacattcgtttgcttcataattagactaagagtgacacactttcattactcaatccaattctagccacttgattatacgccacatcaatctagcacct |
314 |
Q |
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| T |
48277475 |
ctcacatttgtttgcttcataataagactaagagtgacacactttcattactcaatccaattctagccacttgattatccgtcacatcaatctagcatct |
48277574 |
T |
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| Q |
315 |
taaaaactacattcctctttagatgatactataaagtatgtgagacctttgaatctacatgcagctatacccgtctaaaaccgcaagattcaatttctct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48277575 |
taaaaactacattcctctttagatgatactataaagtatgtgcgacctttgaatctacatgcagctgtacccgtctaaaaccgcaagattcaatttctct |
48277674 |
T |
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| Q |
415 |
aataccaaaggccatgtgacatgccctaccacactcttc |
453 |
Q |
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| T |
48277675 |
aataccaaaggccatgtgacatgccctaccacactcttc |
48277713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 48277306 - 48277434
Alignment:
| Q |
74 |
attagagtaaaccatgaaaagaaaaaagataattagaggtttgaagccgaaaacaaggagttgtaactcccacataatcagcaaaatctaaaaaactaat |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48277306 |
attagagtaaaccatgaaaagaaaaaagataattagaggtttgaagccgaaaacaaggagttgtaactcccacataatcagcaaaatctaaaaaactaat |
48277405 |
T |
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| Q |
174 |
atgaatcggaccttgttcatatgatatca |
202 |
Q |
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| T |
48277406 |
atgaatcggatgttgttcatatgatatca |
48277434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 48277181 - 48277262
Alignment:
| Q |
1 |
aaatcactagttttagtcatatcatttatttgtacaaataaatagaataaaatttcttttatagttaaacaaaattagagta |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48277181 |
aaatcactagttttagtcatatcatttatttgtacaaataaatagaataaaatttcttttatagttaaacaaaattagagta |
48277262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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