View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_111 (Length: 251)
Name: NF1204_low_111
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_111 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 14368354 - 14368594
Alignment:
| Q |
1 |
aatccaaaatagtcactgtttgccaagaaagaattggaatcaacaaaatagatgcacaataaacttttctagactaaagggcatgcatttccaaaacaat |
100 |
Q |
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| T |
14368354 |
aatccaaaatagtcactgtttgccaagaaagaattgtaatcaacaaaatagatgcacaataaacttttctagattaaagggcatgcatgtccaaaacaat |
14368453 |
T |
|
| Q |
101 |
ccatatgttgtcgacaataacagctaccaaattacacaacaagacaagacaattttcaaaacttcccttaaagtttggtaatcaaccttttcaatggttc |
200 |
Q |
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| T |
14368454 |
ccatatgttgtcgacaataacagctaccaaattacacaacaagacaagacaattttcaaaaattcccttaaagtttggtaatcaaccttttcaatggttc |
14368553 |
T |
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| Q |
201 |
tagatatctacaatttgttcccttcctcactgtttcctttg |
241 |
Q |
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| T |
14368554 |
tagatatctacaatttgttcccttcctcactgattcatttg |
14368594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26463920 - 26464159
Alignment:
| Q |
1 |
aatccaaaatagtcactgtttgccaagaaagaattggaatcaacaaaatagatgcacaataaacttttctagactaaagggcatgcatttccaaaacaat |
100 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
26463920 |
aatctaaaatagtcagtgtttgccaagaaagaattggaatcaacaaaatagatgcacaataaacttttctagattccagggcatgcatgtccaaaacaat |
26464019 |
T |
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| Q |
101 |
ccatatgttgtcgacaataacagctaccaaattacacaacaagacaagacaattttcaaaacttcccttaaagtttggtaatcaaccttttcaatggttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||| |
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| T |
26464020 |
ccatatgttgtcgacaataacagctaccaaattacagaacaagacaagacaattttcaaaatttccctt-aattttggaaatcaaccttttcaatggttc |
26464118 |
T |
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| Q |
201 |
tagatatctacaatttgttcccttcctcactgtttcctttg |
241 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| |
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| T |
26464119 |
tagatatctacaatctgttcccttcctcactgtttcttttg |
26464159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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