View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_117 (Length: 242)
Name: NF1204_low_117
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_117 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 6026129 - 6026345
Alignment:
| Q |
4 |
atgtcgaagaaaatggaggtagaaaatgatagagaagtgagtagcatagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtg |
103 |
Q |
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| T |
6026129 |
atgtcaaagaaaagggaggtagaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtg |
6026228 |
T |
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| Q |
104 |
aagctactcaagtaccaagtagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatag |
203 |
Q |
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| T |
6026229 |
aagctactcaagtgccaagcagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatag |
6026328 |
T |
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| Q |
204 |
tccttgaatattgtatt |
220 |
Q |
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||||||||||||||||| |
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| T |
6026329 |
tccttgaatattgtatt |
6026345 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 42824166 - 42824335
Alignment:
| Q |
49 |
atagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaagtagaacaagc------------catt |
136 |
Q |
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||||||||||||||||||||||||||||| || |||||||| || |||||||||||| | |||||| ||||||| |||| |||| |
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| T |
42824166 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatcatt |
42824265 |
T |
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| Q |
137 |
tggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
206 |
Q |
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| T |
42824266 |
tgggtcttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
42824335 |
T |
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