View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_12 (Length: 570)
Name: NF1204_low_12
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_12 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 27066042 - 27065473
Alignment:
| Q |
1 |
ttataataaaactactgcttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttg |
100 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27066042 |
ttataataaaactactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgttg |
27065943 |
T |
|
| Q |
101 |
aaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27065942 |
aaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatctt |
27065843 |
T |
|
| Q |
201 |
ctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatggtggatgcgttgagtgagtgcgagagggcgccgag |
300 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065842 |
ctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatgatggtggatgcgttgagtgagtgcgagagggcgccgag |
27065743 |
T |
|
| Q |
301 |
tgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcgatccactgagaat |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27065742 |
tgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcggtccactgagaat |
27065643 |
T |
|
| Q |
401 |
gtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttcctt |
500 |
Q |
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| T |
27065642 |
gtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttcctt |
27065543 |
T |
|
| Q |
501 |
atttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattggatccagtttc |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065542 |
atttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattggatccagtttc |
27065473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 27079742 - 27079196
Alignment:
| Q |
18 |
cttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttat |
117 |
Q |
| |
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||||||| || ||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||| || || |||||||| ||||| ||||| |
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| T |
27079742 |
cttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttat |
27079643 |
T |
|
| Q |
118 |
gcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatg |
217 |
Q |
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||||||||| ||||| | ||||||||||||||||||||||||||| || ||| |||||||||||||||| || |||||||| ||||||||||||||| || |
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| T |
27079642 |
gcctatgccggatattaaggataaattaccgccaaggtcgtttttaccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatgagttg |
27079543 |
T |
|
| Q |
218 |
aagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagc |
317 |
Q |
| |
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||||| |||||||||||||| |||||||| |||||| | || ||||| ||||| | ||| ||||||| |||||||| |||||| | ||||| || |||| |
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| T |
27079542 |
aagcaagtttttaaggtgtctgagaattcctcgatggataagatgatagtggactcattgggtgagtgtgagagggcaccgagtatgggtgagacaaagc |
27079443 |
T |
|
| Q |
318 |
gttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaa |
417 |
Q |
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||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||| ||||||||||| ||||||| ||||||||| ||||||| |
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| T |
27079442 |
gttgtgttggttcacttgaggatatgattgactttgcaacttcagttttgggccatgatgtaactgttcgatcaactgagagtgtaaatggatcgggcaa |
27079343 |
T |
|
| Q |
418 |
ggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgt |
517 |
Q |
| |
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|||||||||| || | ||||| ||||| ||||| || |||||||||||||||||||| || ||||| |||||||||||||||||| ||||||| || |
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| T |
27079342 |
aaatgtcatggttggaagggttaaagggatcaatgggggtaaagttactgaatctgtgtcatgtcaccaaagtttgtttccttatttgctatactattgc |
27079243 |
T |
|
| Q |
518 |
cactcggttccaaatgttcatgtctatgaagcggatctattggatcc |
564 |
Q |
| |
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|||||||||||||| |||| ||| |||||||| ||||| || ||||| |
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| T |
27079242 |
cactcggttccaaaggttcgtgtttatgaagcagatcttttagatcc |
27079196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 63 - 561
Target Start/End: Complemental strand, 27053538 - 27053040
Alignment:
| Q |
63 |
tggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
162 |
Q |
| |
|
||||| |||| |||||||||||||| || | ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||| |
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| T |
27053538 |
tggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgttttt |
27053439 |
T |
|
| Q |
163 |
gcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatg |
262 |
Q |
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||| ||||||||||||| ||||||||| |||||||| ||||||||||| | |||||||| ||||| |||||||| || ||||| | ||| | || ||| |
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| T |
27053438 |
gccacgttccattttgatcaaattgccctttgcatcttctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattcctttatggaaaagatg |
27053339 |
T |
|
| Q |
263 |
atggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctg |
362 |
Q |
| |
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|| ||||| | ||||||||||| || || ||||| ||| |||||| | ||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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| T |
27053338 |
atagtggactcattgagtgagtgtgaaagagcgccaagtaaaggtgagatcaagcgttgtgtaggttcgcttgaggacatgattgactttgcaacttcta |
27053239 |
T |
|
| Q |
363 |
ttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagt |
462 |
Q |
| |
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|||||||| || ||| || ||||| ||||||||||||||||||||| || ||| |||| ||||| ||| |||| |||| |||||||||||| || || |
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| T |
27053238 |
ttttgggtagcaatgtgacggttcggtccactgagaatgtaaatgggtcgaacaacaatgttatggtaggtcaagtaaaggagataaatggtgggaacgt |
27053139 |
T |
|
| Q |
463 |
tactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattgga |
561 |
Q |
| |
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|| || || ||||| || || || |||||||||||||| ||| |||| |||||||| ||||| |||||| ||| | ||||||||| |||| ||||| |
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| T |
27053138 |
tatggagtcagtgtcttgtcatcaaagtttgtttccttacttgctatattactgtcattcggtgccaaatattcgaatttatgaagcgaatcttttgga |
27053040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 14866036 - 14866157
Alignment:
| Q |
41 |
agtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggata |
140 |
Q |
| |
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||||||||||||| |||||| |||| | |||||||||||||| | |||||||||||||| ||||| || || ||||||||||| ||||| || |||| |
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| T |
14866036 |
agtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagata |
14866135 |
T |
|
| Q |
141 |
aattaccgccaaggtcgttttt |
162 |
Q |
| |
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||||||| |||||||||||| |
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| T |
14866136 |
aattacctaaaaggtcgttttt |
14866157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 528
Target Start/End: Original strand, 14866315 - 14866523
Alignment:
| Q |
320 |
tgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaagg |
419 |
Q |
| |
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||||| || ||| ||||||||||||| || ||||||||||| |||||||||| | ||| ||||| | |||||||||||||||||| || |||| |
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| T |
14866315 |
tgtgttgggtctattgaggatatgatcgactttgcaacttcggttttgggtcgaaatgtggtggttcggactactgagaatgtaaatgggtcgaagaagg |
14866414 |
T |
|
| Q |
420 |
atgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtca |
519 |
Q |
| |
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|||| ||||||||| ||||| ||||| ||||| || ||||| || ||||| ||||| || |||||||||||||| |||||| | || || ||||| |
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| T |
14866415 |
atgttatggtgggtcgggttaatgggattaatggcgggaaagtgacccggtctgtttcgtgtcatcagagtttgtttccgtatttgctttattattgtca |
14866514 |
T |
|
| Q |
520 |
ctcggttcc |
528 |
Q |
| |
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||||||||| |
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|
| T |
14866515 |
ctcggttcc |
14866523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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