View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_125 (Length: 207)
Name: NF1204_low_125
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_125 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 27065002 - 27065210
Alignment:
| Q |
1 |
attaggaactcatatgtaacacacttgcataagagaaagtcatagtgtctctttggaagtttgacga-----------taacgtgtgattttgttgaagt |
89 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||||||||||||||||||| |
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| T |
27065002 |
attaggaacttatatgtaacacacttgcataagagaaagtcatagcgtgtgtttggaagtttgacgaaatgatgactataacgtgtgattttgttgaagt |
27065101 |
T |
|
| Q |
90 |
taaacaaatgtaatcaaaattatagcgacacattatannnnnnnnggactcacattcaatccaaacatgcacacattaagttgataaataatacataata |
189 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27065102 |
taaacaaatgtaatcaaaattacagcgacacattatatttttttgggactcacattcaatccaaacatgcacacattaagttgataaataatacatagta |
27065201 |
T |
|
| Q |
190 |
catattctt |
198 |
Q |
| |
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||| ||||| |
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| T |
27065202 |
cattttctt |
27065210 |
T |
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