View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_126 (Length: 204)
Name: NF1204_low_126
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_126 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 7320282 - 7320409
Alignment:
| Q |
1 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7320282 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
7320381 |
T |
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| Q |
101 |
acattagtggtgttctactttacttcat |
128 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
7320382 |
acattagtggtgttctactttacttcat |
7320409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 7304280 - 7304407
Alignment:
| Q |
1 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7304280 |
gaagacacaaacatgtacaaccacattgtattaggaaccttgttaccacactacttgtgggttccacttccaagattcttccaaagatggcttcgaaact |
7304379 |
T |
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| Q |
101 |
acattagtggtgttctactttacttcat |
128 |
Q |
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|| || ||| ||| |||||||||||||| |
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| T |
7304380 |
acgttggtgctgtcctactttacttcat |
7304407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 7302267 - 7302394
Alignment:
| Q |
1 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
100 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||| ||||| | ||||||||| | ||| ||| | ||||||||||||||||||||||||| |
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| T |
7302267 |
gaagacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatacttgtgggtgctactcccacggttcttccaaacatggcttcgaaact |
7302366 |
T |
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| Q |
101 |
acattagtggtgttctactttacttcat |
128 |
Q |
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|| || ||| ||| || ||||||||||| |
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| T |
7302367 |
acgttggtgctgtccttctttacttcat |
7302394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 7281824 - 7281951
Alignment:
| Q |
1 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
100 |
Q |
| |
|
||||||||||| | |||||| |||| | || || |||||||| || ||||| |||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
7281824 |
gaagacacagatttctacaacagcattttgttgggtaccttgttacctcagtttttgtgggtcccacttccaaggttcttccaaacatggcttcgtaact |
7281923 |
T |
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| Q |
101 |
acattagtggtgttctactttacttcat |
128 |
Q |
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||||| ||||| |||||||||||||||| |
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| T |
7281924 |
acattggtggtcttctactttacttcat |
7281951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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