View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_13 (Length: 566)
Name: NF1204_low_13
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 55 - 506
Target Start/End: Original strand, 29672385 - 29672836
Alignment:
| Q |
55 |
ccacagaggctacgagcatagtaaagtgctaaacgtgctatgcctgaatgaccatgaagttcacctatggcttttggaaaaacgggccgacccagggctt |
154 |
Q |
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| T |
29672385 |
ccacagaggctacgagcatagtaaagtgctaaacgtgctatgcctgaatgaccatgaagttcacctatggcttttggaaaaacgggccggcccagggctt |
29672484 |
T |
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| Q |
155 |
tttcttgggccaaacggtgggtttcggtgaagcggcaagagtaactgacggagccgtttgtgaatttaacggcgtggaccataccgtctccgtcgaagaa |
254 |
Q |
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| T |
29672485 |
tttcttgggccaaacggtgggtttcggtgaagcggcaagagtaacttacggagccgtttgtgaatttaacggcgtggaccataccgtctccgtcgaagaa |
29672584 |
T |
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| Q |
255 |
gtggtgaccggctactggctcgtaaagtggagtggcgccgttacggaggtaaacaccgtaaatgttggttgggattttgccggtaattggaagagattgg |
354 |
Q |
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| T |
29672585 |
gtggtgaccggctactggctcgtaaagtggattggcgccgttacggaggtaaacaccgtcaatgttggttgggattttgccggtaattggaagagattgg |
29672684 |
T |
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| Q |
355 |
gttaccgggtgttccggtactggggcgaagttaccggcaatttggacacgtgggtcggaggtttttggtagtgggtgtttctgttcttgtttgattaagg |
454 |
Q |
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| T |
29672685 |
gttaccgggtgttccggtactggggcgaagttaccggcaatttgaacacgtgggtcggaggttttgggtagtgggtgtttttgttcttgtttgattaagg |
29672784 |
T |
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| Q |
455 |
ttgtttcgacgaagtcaagggcggtggcggctgctttttgtagaaggttcca |
506 |
Q |
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| T |
29672785 |
ttgtttcgacgaagtcgagggcggtggcggcggctttttgtagaaggttcca |
29672836 |
T |
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