View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_14 (Length: 563)
Name: NF1204_low_14
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 108 - 465
Target Start/End: Original strand, 42823974 - 42824331
Alignment:
| Q |
108 |
agagacaccagcaccacaccaaaccatagagtcaaaaaaggtgtgtcttctaacattatgtaaatttggatg----------tattatatatcttaatta |
197 |
Q |
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| T |
42823974 |
agaggcaccagcaccacaccaaaccatagagtcaaaaaaggtgtgtcttctaacattatgtaaatttggatgcattgtattgtattatatatcttaatta |
42824073 |
T |
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| Q |
198 |
acatataaataaatagttgaattttaaatgaagtcagagaaaatgaaagaagtggtatnnnnnnnnnnnnnnnnnagagatattgggataagcagcaaca |
297 |
Q |
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| T |
42824074 |
acatataaatac----ttgaattttaaatgaagtcggagaaaatgaaagaagtggtatatgatgatgat------agagatattgggataagcagcaaca |
42824163 |
T |
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| Q |
298 |
agatagggtcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatca |
397 |
Q |
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| T |
42824164 |
agatagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatca |
42824263 |
T |
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| Q |
398 |
tttgggtcttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctaca |
465 |
Q |
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| T |
42824264 |
tttgggtcttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctaca |
42824331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 6026272 - 6026325
Alignment:
| Q |
410 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttcta |
463 |
Q |
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| T |
6026272 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattcta |
6026325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 373
Target Start/End: Original strand, 6026174 - 6026247
Alignment:
| Q |
300 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaag |
373 |
Q |
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| T |
6026174 |
atagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaag |
6026247 |
T |
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