View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_17 (Length: 514)
Name: NF1204_low_17
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Complemental strand, 41924527 - 41924049
Alignment:
| Q |
13 |
aatatggaaggaagttgcaggcatggtatttaattagtatgtcaagttaaccagcactaaaaattaagtatagcatgggccaaagacacaaccatacatc |
112 |
Q |
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| T |
41924527 |
aatatggaaggaagttgcaggcatggtatttaattagtatgtcaagttaaccagcactaacaataaagtatagcatgggccaaagacacaaccatacatc |
41924428 |
T |
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| Q |
113 |
aaataatgttgccatagcaattcaagaaattataataagatggctgctcacccagagtttctgcctagaccgtctacagtggtgatatctaaacacatag |
212 |
Q |
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| T |
41924427 |
aaataatgttgccatagcaattcaagaaattataataagatggctgctcacccagagtttctgcttagaccgtctacggtggtgatatctaaacacatag |
41924328 |
T |
|
| Q |
213 |
gcataaatatattaccatttattaaat-------gagttatatatacacacgtgagatccattaaaaattttaaaaatagattctttattttaatattct |
305 |
Q |
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| T |
41924327 |
gcataaatatattatcatttattaaattataaatgagttatatatacat--gtgagatccattaaaaaatttaaaaatagattctttattttaatattct |
41924230 |
T |
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| Q |
306 |
tcattttccaagaaggaaacatgcagtactggttcgaccacatcaacctcattattttttcacattttgctgcaatataaaggtttgcaacgtagaaatt |
405 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41924229 |
tcattttccaagaaggaaacatgcactactggttcgaccacatcaacctcattatttttccacattttgctgcaatataaaggtttgcaacgtagaaatt |
41924130 |
T |
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| Q |
406 |
taaaaattatatcacaagaaggaaattttcaactttcaacattaactattagtcatttgtttcaaagtagtagtcattcat |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41924129 |
taaaaattatatcacaagaaggaaattttcaactttcaacattaactattagtcatttgtttcaaagtagtagtcattcat |
41924049 |
T |
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