View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_19 (Length: 510)
Name: NF1204_low_19
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 45225881 - 45226387
Alignment:
| Q |
1 |
ccacagagtaattccaatccctgttttcatatgagttccaaataacttgcccgatctgccatcaacaaatcataacttcttttacacaggtgggtaacat |
100 |
Q |
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| T |
45225881 |
ccacagagtaattccaatccctgttttcatatgagttccaaataacttgcctgatctgccatcaacaaatcataacttcttttacacaggtgggtaacat |
45225980 |
T |
|
| Q |
101 |
gttagtggaaatcccaggattcagatcaccgttgataggttactactcatcctactctcacgtgtttggctgaaccatgtgtgaccgatcctcttaataa |
200 |
Q |
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| T |
45225981 |
gttagtggaaatcccaggattcagatcaccattgataggttactactcatcttactcttacgtgtttggctgaaccatgtgtgatcgatcctcttaataa |
45226080 |
T |
|
| Q |
201 |
atatttcctccttgctatattaggaattgctttcttggtcacttcttt-------atcataatttacatttctttgatgtctacatcatacttaaaactg |
293 |
Q |
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| T |
45226081 |
atatttcctccttgctatattaggaattgctttcttggtcacttctttatcctttatcataatttacatttctttgatgtctacatcatacttaaaactg |
45226180 |
T |
|
| Q |
294 |
atttcataaataaaaaattaaatgtttctttgcctttgcctcattagtttatgattacattagtagaagtgtttgataccataggattttcctaaatgtc |
393 |
Q |
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| T |
45226181 |
atttcataaataaaaaattaaatgtttctttgcctttgcctcattagtttatgattacattagtagaagtgtttgataccataggattttcctaaatgtc |
45226280 |
T |
|
| Q |
394 |
tttttggtggatggtgacataattgcctgcgagtgccatgtgctattgttcttgagcatgtgcatatggtttattgattgcccaaattgcagtgttgttg |
493 |
Q |
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| T |
45226281 |
tttttggtggatggtgacataattgcctgcgagtgccatgtgctattgttcttgagcatgtgcatatggtttattgattgcccaaattgcagtgttgttg |
45226380 |
T |
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| Q |
494 |
ttctctg |
500 |
Q |
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| T |
45226381 |
ttgtctg |
45226387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 29239723 - 29239916
Alignment:
| Q |
117 |
ggattcagatcaccgttgataggttactactcatcctactctcacgtgtttggctgaaccatgtgtgaccgatcctcttaataaatatttcctccttgct |
216 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
29239723 |
ggattcagattaccattgataggttactactcatcctactctcacgtgtttggctgaaccatgtgtgaccgatcctctttataaatatttcctctttgct |
29239822 |
T |
|
| Q |
217 |
atattaggaattgctttcttggtcac---ttctttatcataatttacatttctttgatgtctacatcatacttaaaactgatttcataaataaa |
307 |
Q |
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|| ||||||| |||||||||||| || || |||||||| |||| || | ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29239823 |
attttaggaactgctttcttggttactttttttttatcatggtttaaatctttttgatgtctacatcatacttaaaactgatttcatgaataaa |
29239916 |
T |
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