View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_low_20 (Length: 502)
Name: NF1204_low_20
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 100 - 473
Target Start/End: Complemental strand, 30388273 - 30387900
Alignment:
| Q |
100 |
cagagaacttggtgatactgtttctttcttaagggattggacttttaatccttatccaagattaagatcccaannnnnnnnnnnnnnnnncatgtcacta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30388273 |
cagagaacttggtgatactgtttctttcttaagggattggacttttaatccttatccaagattaagatcccaatttttatttttcattttcatgtcacta |
30388174 |
T |
|
| Q |
200 |
gtagacaatacttggataagtactatggtttttaattttgatttaaggaaatgtttttaaagcattttctatgtaatttaggtgaattatagtggtacta |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
30388173 |
gtagacaatacttggataagtactatggtttttaattttgatttaaggaaatgtttttaaagccttttctatgtgatttaggtgaattttagtggtacta |
30388074 |
T |
|
| Q |
300 |
gtgtggagactaagggattaaaatgtgtgtaagtaaggttgagcaaaaatgggaggtttgtaattaattatatttcacttagaatttataatttactttg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30388073 |
gtgtggagactaagggattaaaatgtgtgtaagtaaggttgagcaaaaatgggaggtttgtagttaattatatttcacttagaatttataatttactttg |
30387974 |
T |
|
| Q |
400 |
agcttaatttataaggggttgattgtcctcactaatatgtttttatcatcttacactaatgtatgactcttaac |
473 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
30387973 |
agcttaatttataaggggttgattgtcttcactaatatgtttttatcatattacattaatgtatgactcttaac |
30387900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University