View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_22 (Length: 501)

Name: NF1204_low_22
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_22
NF1204_low_22
[»] chr4 (1 HSPs)
chr4 (29-501)||(34478266-34478738)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 29 - 501
Target Start/End: Complemental strand, 34478738 - 34478266
Alignment:
Q  29 acacatatttcaaaaataaacacaaactaaaggatatgnnnnnnnnnnnnnnnncactctatttagtatcaaaattaaaaataacttcttcttgacaatt 128  Q
    ||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||    
T  34478738 acacatatttcaaaaataaacacaaactaaaggatatgaaaaaaaaa-------cactctatttagtatcaaaattaaaaataacttcttcttgacaatt 34478646  T
Q  129 catttttccctcaggtacccaattatatttcattctaacctctacctgaaagcttgtattgtcatgtttgttcaaacttaatctggtttacccaaaaacc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34478645 catttttccctcaggtacccaattatatttcattctaacctctacctgaaagcttgtattgtcatgtttgttcaaacttaaactggtttacccaaaaacc 34478546  T
Q  229 aaaactatatctgttcctcacccaatttcaactttccattaaatctactataattccctctctcatctccacagcacatgcattttatagaaacactaat 328  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  34478545 aaaactatatttgttcctcacccaatttcaactttccattaaatctactataattccctttctcatctccacaacacatgcattttatagaaacactaat 34478446  T
Q  329 atagacacggataaccg-----------acacatgatagatatccgtaataatttaagcaaatgaaagtgatttgatgtaaccacatatcaccttcaata 417  Q
    ||| |||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34478445 ataaacacggataaccgacacgatattgacacatgatagatatccgtaataatttaagcaaatgaaagtgatttgatgtaaccacataccaccttcaata 34478346  T
Q  418 tgaagtgccggtgctgcatatgtttactttttacgcaagaatctgctattttaattaatcataacttttcaaatataatatatt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||||||||||||||||||||||||||    
T  34478345 tgaagtgccggtgctgcatatgtttactttttacgcaagaatccgctatt----ttaatcataacttttcaaatataatatatt 34478266  T

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