View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_23 (Length: 500)

Name: NF1204_low_23
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_23
NF1204_low_23
[»] chr4 (1 HSPs)
chr4 (29-500)||(34478266-34478738)


Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 29 - 500
Target Start/End: Complemental strand, 34478738 - 34478266
Alignment:
Q  29 acacatatttcaaaaataaacacaaactaaaggatatgnnnnnnnnnnnnnnncactctatttagtatcaaaattaaaaataacttcttcttgacaattc 128  Q
    ||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||    
T  34478738 acacatatttcaaaaataaacacaaactaaaggatatgaaaaaaaaa------cactctatttagtatcaaaattaaaaataacttcttcttgacaattc 34478645  T
Q  129 atttttccctcaggtacccaattatatttcattctaacctctacctgaaagcttgtattgtcatgtttgttcaaacttaatctggtttacccaaaaacca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34478644 atttttccctcaggtacccaattatatttcattctaacctctacctgaaagcttgtattgtcatgtttgttcaaacttaaactggtttacccaaaaacca 34478545  T
Q  229 aaactatatctgttcctcacccaatttcaactttccattaaatctactataattccctctctcatctccacagcacatgcattttatagaaacactaata 328  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  34478544 aaactatatttgttcctcacccaatttcaactttccattaaatctactataattccctttctcatctccacaacacatgcattttatagaaacactaata 34478445  T
Q  329 tagacacggataaccg-----------acacatgatagatatccgtaataatttaagcaaatgaaagtgatttgatgtaaccacatatcaccttcaatat 417  Q
    || |||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34478444 taaacacggataaccgacacgatattgacacatgatagatatccgtaataatttaagcaaatgaaagtgatttgatgtaaccacataccaccttcaatat 34478345  T
Q  418 gaagtgccggtgctgcatatgtttactttttacgcaagaatctgctattttaattaatcataacttttcaaatataatatatt 500  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||||||||||||||||||||||||||    
T  34478344 gaagtgccggtgctgcatatgtttactttttacgcaagaatccgctatt----ttaatcataacttttcaaatataatatatt 34478266  T

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