View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_25 (Length: 492)
Name: NF1204_low_25
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_25 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 167 - 492
Target Start/End: Original strand, 31493158 - 31493483
Alignment:
| Q |
167 |
cgtatttttacagaatctaatatcccaaaaggtttccaatttgcactcaatcgggcctagattattcatcatgaaaaaatatcacaaatcaaggtcctca |
266 |
Q |
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| T |
31493158 |
cgtatttttacagaatctaatatcccaaaaggtttccaatttgcactcaaccgggcctagattattcatcatgaaaaagtatcgcaaatcaaggtcctca |
31493257 |
T |
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| Q |
267 |
taaatttatgacttggcttccaaatttctctcaaactgcttcattacaagttccacctgcgaatagaatccggaagatgttccctctccatcaccaacaa |
366 |
Q |
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| T |
31493258 |
taaatttatgacttggcttccaaatttctctcaaactgcttcattacaagttccacctgcgaatagaatacggaagatgttccctctccatcaccaacaa |
31493357 |
T |
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| Q |
367 |
ccaacgggtattctcgtaaaattttctccagattatgttttgaccaaaaaaccataacgatgtagccagtggcctcacagatcatcggatgaattccacc |
466 |
Q |
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| T |
31493358 |
ccaacgggtattctcgtaaaaatttctccaaattatgttttgaccaaaaaaccataacgatgtagccagtggcttcacagagcatcggatgaattccacc |
31493457 |
T |
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| Q |
467 |
attgacccaactatctaaccctgcat |
492 |
Q |
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| T |
31493458 |
attgacccaactatctaaccctgcat |
31493483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 31531258 - 31531345
Alignment:
| Q |
83 |
cataggcgatttacattatgtgtggttagattttccttttttcttgacggaaaagtaaaatttttgctgcatgaagcacgttcacgta |
170 |
Q |
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| T |
31531258 |
cataggcgatttacattatgtgtggttagattttccttttttcttgacggaaaagtaaaaattttgctacatgaagcacgttcacgta |
31531345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 187 - 485
Target Start/End: Complemental strand, 31402942 - 31402650
Alignment:
| Q |
187 |
tatcccaaaaggtttccaatttgcactcaatcgggcctagattattcatcatgaaaaaatatcacaaatcaaggtcctcataaatttatgacttggcttc |
286 |
Q |
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| T |
31402942 |
tatcccaaaaggtttccaatcttcccttaatgtgacatagattgttcatcaagaaaaaatagcgcaaagcagggtcctcataatattttgacttggcttc |
31402843 |
T |
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| Q |
287 |
caaatttctctcaaactgcttcattacaagttccacctgcgaatagaatccggaagatgttccctctccatcaccaacaaccaacgggtattctcgtaaa |
386 |
Q |
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| T |
31402842 |
caattttctctcaaactgctccataataagcaccatttgtgaataaaat---aaagatgttcctgctccat---caacaactaaggggtacccttgtaaa |
31402749 |
T |
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| Q |
387 |
attttctccagattatgttttgaccaaaaaaccataacgatgtagccagtggcctcacagatcatcggatgaattccaccattgacccaactatctaac |
485 |
Q |
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| T |
31402748 |
attttctccagattttgtcttgaccaaaaagccgcgacgatggagctagtggcctcacatgtcattggatgtactccaccatcagcccaacaatctaac |
31402650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 459
Target Start/End: Original strand, 5478166 - 5478431
Alignment:
| Q |
187 |
tatcccaaaaggtttccaatttgcactcaatcgggcctagattattcatcatgaaaaaatatcacaaatcaaggtcctcataaatttatgacttggcttc |
286 |
Q |
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| T |
5478166 |
tatcccaaatggtttccaatatgcacttaatgtgacataggtgattcatcaagaaaaa-tagcataaagcaggatcttcataaatttatgacttaacttc |
5478264 |
T |
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| Q |
287 |
caaatttctctcaaactgcttcattacaagttccacctgcgaatagaatccggaagatgttccctctccatcaccaacaaccaacgggtattctcgtaaa |
386 |
Q |
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| T |
5478265 |
taattttctctcaaactactccattataagctccatctgggaataaaat---gaagaagttcctgctccatca---acagccaagcagaattcttgtaaa |
5478358 |
T |
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| Q |
387 |
attttctccagattatgttttgaccaaaaaaccataacgatgtagccagtggcctcacagatcatcggatgaa |
459 |
Q |
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| T |
5478359 |
tttttctccagattttgttttaaccgataagcaataacaatgtagccagtggcctcacatgtcatcggatgaa |
5478431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 468
Target Start/End: Original strand, 8405743 - 8405941
Alignment:
| Q |
264 |
tcataaatttatgacttggcttccaaatttctctcaaactgcttcattacaagttccacctgcgaatagaatccggaagatgttccctctccatcaccaa |
363 |
Q |
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| T |
8405743 |
tcataaatctatgacttaacatccaattttctcttaaactgctccattataagctccatctgtgaatagaat---gaagaagttcctgctccatca---a |
8405836 |
T |
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| Q |
364 |
caaccaacgggtattctcgtaaaattttctccagattatgttttgaccaaaaaaccataacgatgtagccagtggcctcacagatcatcggatgaattcc |
463 |
Q |
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| T |
8405837 |
caaccgagcggaattcttgtaaattgaactccagattttgtcttgacggataaaccataacaatgtagccggtggcctcacatgtcattggatgaacgcc |
8405936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 459
Target Start/End: Complemental strand, 9137368 - 9137270
Alignment:
| Q |
361 |
caacaaccaacgggtattctcgtaaaattttctccagattatgttttgaccaaaaaaccataacgatgtagccagtggcctcacagatcatcggatgaa |
459 |
Q |
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| T |
9137368 |
caacaaccaaaggatattcttgtaaaattttctccaagttttgtcttgaccagaaagccataacgatgtgggcaatggtctcgcaggtcattggatgaa |
9137270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 438
Target Start/End: Complemental strand, 6035616 - 6035501
Alignment:
| Q |
323 |
ctgcgaatagaatccggaagatgttccctctccatcaccaacaaccaacgggtattctcgtaaaattttctccagattatgttttgaccaaaaaaccata |
422 |
Q |
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| T |
6035616 |
ctgcgaatagaataaagaagatgtttccgctccgtcagcaacaaacaagagatattatcataaaatttgctccaaattctgtcttgaccagaaggccata |
6035517 |
T |
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| Q |
423 |
acgatgtagccagtgg |
438 |
Q |
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| T |
6035516 |
acgatgtacccagtgg |
6035501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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