View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_26 (Length: 486)
Name: NF1204_low_26
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 3820105 - 3820016
Alignment:
| Q |
274 |
ttatatgacactttacttgatataaaaacatgtagagtctttggttgccttcaactatgcctcaaaccttcaatatcatagagccaaact |
363 |
Q |
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| T |
3820105 |
ttatatgacactttacttgatataaaaacatgtagagtctttggttgcctttaactatgcctcaaaccttcaatatcatagagccaaact |
3820016 |
T |
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Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 371 - 459
Target Start/End: Complemental strand, 3819633 - 3819545
Alignment:
| Q |
371 |
catagtactccaaatcctatttctcagtatatgtcatttactaatttctataattcttattatcattttggtttgtcacttaccactca |
459 |
Q |
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| T |
3819633 |
catagtactccaattcctatttctcagtatatgtcatttactaatttctataattcttattatcattttggtttgtcacttaccactca |
3819545 |
T |
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