View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_low_27 (Length: 478)
Name: NF1204_low_27
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_27 |
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| [»] scaffold0483 (1 HSPs) |
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| [»] scaffold0109 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0483 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0483
Description:
Target: scaffold0483; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 3597 - 3747
Alignment:
| Q |
1 |
aatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaa |
100 |
Q |
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||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3597 |
aatttttgtgtttgaatataaaatattaatggtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacattttttgtgtatatcaa |
3696 |
T |
|
| Q |
101 |
tatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtca |
151 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
3697 |
tatacctgtttttttgaagtgaccgactcgtcacccctcctaatcccgtca |
3747 |
T |
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Target: scaffold0109 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0109
Description:
Target: scaffold0109; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 48437 - 48587
Alignment:
| Q |
1 |
aatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaa |
100 |
Q |
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||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48437 |
aatttttgtgtttgaatataaaatattaatggtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacattttttgtgtatatcaa |
48536 |
T |
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| Q |
101 |
tatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtca |
151 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
48537 |
tatacctgtttttttgaagtgaccgactcgtcacccctcctaatcccgtca |
48587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 125945 - 126095
Alignment:
| Q |
1 |
aatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaa |
100 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
125945 |
aatttttgtgtttgaatctaaaatattaattgtatagttaatttagttaattattaacaaatgattgaatagcaaaatgaacattttttgtgtatatcaa |
126044 |
T |
|
| Q |
101 |
tatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtca |
151 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
126045 |
tatacctgttttttttaagtgaccgactcgtcacccctcctaatcccgtca |
126095 |
T |
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Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 14694196 - 14694345
Alignment:
| Q |
1 |
aatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
14694196 |
aatttttgtgtttgaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaataacaaaatgaacattttttatgtatatcaa |
14694295 |
T |
|
| Q |
101 |
tatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtc |
150 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
14694296 |
tatacctgtttttttgaagtgaccgactcgtcacccctcctaatcccgtc |
14694345 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 14647722 - 14647868
Alignment:
| Q |
1 |
aatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaa |
100 |
Q |
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|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |
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| T |
14647722 |
aatttttgtgtttgaatctaaaatataaattgtatagttaatttagttaatgattaacaaatgattgaaaaacaaaatgaacattttttgtgtatatcaa |
14647821 |
T |
|
| Q |
101 |
tatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatccc |
147 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||| |
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| T |
14647822 |
tatacctgtttttttgaagtgaccgactcgtcacccctcctaatccc |
14647868 |
T |
|
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Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 6765464 - 6765314
Alignment:
| Q |
1 |
aatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaa |
100 |
Q |
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|
||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
6765464 |
aatttttgtatttgaatctaaaatattaattgtttagttaatttagttaatgattaataaatgattgaataataaaatgaacatttcttgtgtatatcag |
6765365 |
T |
|
| Q |
101 |
tatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtca |
151 |
Q |
| |
|
|||||||| || ||| ||||||||||||| ||||||||||||||| |
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| T |
6765364 |
tatacctgtttttttgatgtggccgactcgtcacccctcctaatcccgtca |
6765314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 6787894 - 6787746
Alignment:
| Q |
1 |
aatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatca- |
99 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |
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| T |
6787894 |
aatttttgtatttgaatctaaaatattaattgtacaattaatttagttaatgattaataaatgattgaatagtaaaatgaacatttctagtgtatatcag |
6787795 |
T |
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| Q |
100 |
-atatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatccc |
147 |
Q |
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||||||||| || ||| ||||||||||||| ||||||||||| |
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| T |
6787794 |
tatatacctgtttttttgatgtggccgactcgtcacccctcctaatccc |
6787746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 28620501 - 28620409
Alignment:
| Q |
15 |
aatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaatatacct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||||| |
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|
| T |
28620501 |
aatctaaaatattaattgtatagttaatttagttaatgattaacaaataattgaatagtaaaatgaacatttcttgcgtatattaatatacct |
28620409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28621382 - 28621489
Alignment:
| Q |
1 |
aatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaa |
100 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| || |
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| T |
28621382 |
aatttttgtgggtgaatctaaaatattaattgtatagttaatttagttaatgattaaaaaatgattgaatggcaaaatgaatatttcttgtgtatattaa |
28621481 |
T |
|
| Q |
101 |
tatacctg |
108 |
Q |
| |
|
|| ||||| |
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|
| T |
28621482 |
tagacctg |
28621489 |
T |
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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 20027835 - 20027759
Alignment:
| Q |
29 |
attgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaatatacct |
107 |
Q |
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|
||||||||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
20027835 |
attgtatagttaaattagctaatgattaataaatgattgaatagtaaaatgaacatttcttgtg--tatcaatatacct |
20027759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 37865721 - 37865771
Alignment:
| Q |
152 |
atatgcgtcttacacacacttttgaaagataggtcaatttcctaaacatat |
202 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
37865721 |
atatgcgtcttacacaaacttttgaaagctaggtcaatttcctaaacatat |
37865771 |
T |
|
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