View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_29 (Length: 459)

Name: NF1204_low_29
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_29
NF1204_low_29
[»] chr6 (6 HSPs)
chr6 (330-448)||(14368218-14368336)
chr6 (175-303)||(14368017-14368153)
chr6 (30-195)||(14367761-14367934)
chr6 (160-249)||(16509327-16509415)
chr6 (211-246)||(665953-665988)
chr6 (202-246)||(3841173-3841217)
[»] chr8 (10 HSPs)
chr8 (388-448)||(26463842-26463902)
chr8 (334-389)||(26463755-26463810)
chr8 (160-246)||(34552608-34552693)
chr8 (160-242)||(38198165-38198246)
chr8 (161-246)||(26463568-26463652)
chr8 (163-246)||(12022255-12022338)
chr8 (161-236)||(31543194-31543269)
chr8 (161-249)||(1281190-1281278)
chr8 (161-245)||(10028157-10028241)
chr8 (160-196)||(20472738-20472774)
[»] chr2 (5 HSPs)
chr2 (160-244)||(21662323-21662406)
chr2 (173-246)||(41778832-41778905)
chr2 (160-246)||(886964-887048)
chr2 (152-246)||(31086544-31086637)
chr2 (160-197)||(14187120-14187157)
[»] chr1 (6 HSPs)
chr1 (160-246)||(27739098-27739183)
chr1 (165-236)||(25541939-25542008)
chr1 (160-239)||(49832593-49832672)
chr1 (189-251)||(2506614-2506676)
chr1 (161-246)||(30010379-30010464)
chr1 (161-245)||(8529846-8529930)
[»] chr4 (10 HSPs)
chr4 (165-246)||(47694401-47694481)
chr4 (161-246)||(47433820-47433906)
chr4 (160-246)||(41227529-41227612)
chr4 (163-246)||(43961459-43961542)
chr4 (160-243)||(55510216-55510299)
chr4 (172-246)||(27735803-27735877)
chr4 (165-246)||(26166988-26167069)
chr4 (165-246)||(37711194-37711275)
chr4 (160-251)||(11842355-11842444)
chr4 (197-249)||(14539355-14539407)
[»] chr3 (7 HSPs)
chr3 (161-246)||(54996792-54996874)
chr3 (160-197)||(34579859-34579896)
chr3 (161-245)||(46204933-46205017)
chr3 (161-246)||(14898023-14898108)
chr3 (160-197)||(18086026-18086063)
chr3 (161-221)||(651778-651838)
chr3 (161-249)||(28582618-28582706)
[»] chr7 (5 HSPs)
chr7 (161-246)||(33655220-33655305)
chr7 (160-246)||(33224136-33224221)
chr7 (161-246)||(41497069-41497154)
chr7 (202-246)||(18063673-18063717)
chr7 (202-246)||(48093981-48094025)
[»] chr5 (3 HSPs)
chr5 (160-197)||(34980971-34981008)
chr5 (160-217)||(40644084-40644140)
chr5 (161-197)||(33744240-33744276)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 330 - 448
Target Start/End: Original strand, 14368218 - 14368336
Alignment:
Q  330 tctcaaaagaatgtcaattctaaaataaattcattctcttcttacaatgcaaatctagaacaatattaaagctcaaattgggagaggtatctaacatgca 429  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14368218 tctcaaaagaatgtcaattctaaaataaatttattctcttcttacaatgcaaatctagaacaatattaaagctcaaattgggagaggtatctaacatgca 14368317  T
Q  430 tatgaatcgtctctttcat 448  Q
    |||||||||||||||||||    
T  14368318 tatgaatcgtctctttcat 14368336  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 14368017 - 14368153
Alignment:
Q  175 taaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttattatat--------aattaagtatggtgg 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |        |||||||| |||| |    
T  14368017 taaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatgatcatttattatgtttaaaatcaattaagtgtggtcg 14368116  T
Q  267 aagtattatatgatcacaaccagacatttaaaatcaa 303  Q
    ||||||||||||||||||| |||||||||||||||||    
T  14368117 aagtattatatgatcacaaacagacatttaaaatcaa 14368153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 14367761 - 14367934
Alignment:
Q  30 agacgaagtggcactggcaattaacttgttcttggtttggtccaatttgtcatttcaaaccgaaagaaaatttgatttgttgattcct----------nn 119  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||  ||| |||||||||||||                
T  14367761 agacgaagtggcactggaaattaacttgttcttggcttggtccaatttgtcattttaaaccgaaagaaa--ttggtttgttgattcctcaaaaaaaaata 14367858  T
Q  120 nnnnnnnnnnttggtttgttgattttagtttgggagacatcttacttttctcttttaaattatagacattataaaa 195  Q
              ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  14367859 aaaaaaaaaattggtttgttgattttagttttggagagatcttacttttctcttttaaattatagacattataaaa 14367934  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 16509327 - 16509415
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttattat 249  Q
    ||||||||||| |||| ||||| ||||| ||||||||| || || ||||| ||| ||||||| | |||||||||||| ||||| ||||||    
T  16509327 cttacttttcttttttgaattaaagacactataaaatg-tttttaaaaataaatcaagtgtgattgaagtattatatgatcatctattat 16509415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 665988 - 665953
Alignment:
Q  211 aattaagtgtggtcgaagtattatatcatcatttat 246  Q
    ||||||||||||| ||||||||||||||||||||||    
T  665988 aattaagtgtggttgaagtattatatcatcatttat 665953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 3841173 - 3841217
Alignment:
Q  202 tttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||    
T  3841173 tttaaaataaattaagtgtttttgaagtattatatcatcatttat 3841217  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 26463842 - 26463902
Alignment:
Q  388 aacaatattaaagctcaaattgggagaggtatctaacatgcatatgaatcgtctctttcat 448  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26463842 aacaatattaaagctcaaattgagagaggtatctaacatgcatatgaatcgtctctttcat 26463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 26463755 - 26463810
Alignment:
Q  334 aaaagaatgtcaattctaaaataaattcattctcttcttacaatgcaaatctagaa 389  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  26463755 aaaagaatgtcaattctaaaataaatttattctcttcttacaatgcaagtctagaa 26463810  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 34552608 - 34552693
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    ||||||||||||||||||||||| |||| |||| |||| || |||||||| ||||||| ||  | |||||||||||| |||||||||    
T  34552608 cttacttttctcttttaaattattgacactatataatg-ttttttaaaattaattaagcgtaattgaagtattatatgatcatttat 34552693  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 38198246 - 38198165
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcat 242  Q
    ||||||||||  |||||||||| ||||| |||||| || || |||||||| ||||||||||| | |||||||||||| |||||    
T  38198246 cttacttttcatttttaaattacagacactataaagtgttt-tttaaaatgaattaagtgtgattgaagtattatatgatcat 38198165  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 26463568 - 26463652
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||| |||||||||||||||||  |||  || |||||||| |||||||||||||||||||| || ||| ||||||  |||||||||    
T  26463568 ttacctttctcttttaaattatgtacacgatgaaatgctt-tttaaaatcaattaagtgtgatcaaaggattatacaatcatttat 26463652  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 12022338 - 12022255
Alignment:
Q  163 acttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||| | ||||||||||  |||| | ||||||| || |||||||| ||||||||||  | |||||||||||| |||||||||    
T  12022338 acttttattttttaaattacggacaatgtaaaatgtttttttaaaataaattaagtgtttttgaagtattatatgatcatttat 12022255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 31543269 - 31543194
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatat 236  Q
    |||||||||| ||||||||||| |||  ||||| ||| || | |||||| ||||||||||| | ||||||||||||    
T  31543269 ttacttttcttttttaaattatggaccatataacatgtttttctaaaataaattaagtgtgattgaagtattatat 31543194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 1281190 - 1281278
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttattat 249  Q
    |||||||||| ||||||||||  |||  ||||| ||| || | ||| || ||| ||||||||| |||||||||||| ||| ||||||||    
T  1281190 ttacttttcttttttaaattacggacgatataacatgtttttctaagataaatcaagtgtggttgaagtattatattatcgtttattat 1281278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 10028157 - 10028241
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcattta 245  Q
    |||||||||| ||||||||||  |||  ||||| ||  || |||||||| ||||||||||||| ||||| |||||| ||| ||||    
T  10028157 ttacttttcttttttaaattacggaccatataacatatttttttaaaataaattaagtgtggttgaagtcttatatgatcgttta 10028241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 20472738 - 20472774
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaat 196  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  20472738 cttacttttcttttttaaattacagacattataaaat 20472774  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 21662406 - 21662323
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcattt 244  Q
    ||||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||| || | |||||||||||| |||||||    
T  21662406 cttacttttctcttttaaagtatagacactgtaaaatgttt-tttaaaatcaattaagtttgattgaagtattatatgatcattt 21662323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 41778832 - 41778905
Alignment:
Q  173 tttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||||| |||| ||||||||| || |||||||| ||||||||||| | |||||||||||| |||||||||    
T  41778832 tttaaattatggacagtataaaatgtttttttaaaataaattaagtgtgattgaagtattatatgatcatttat 41778905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 886964 - 887048
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    ||||||||||| |||||||||| |  || |||||||||||| |||||||| ||||| ||||| | |||||||||||| |||||||||    
T  886964 cttacttttcttttttaaattaca--caatataaaatgcttttttaaaataaattatgtgtgattgaagtattatatgatcatttat 887048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 246
Target Start/End: Original strand, 31086544 - 31086637
Alignment:
Q  152 ggagacatcttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    ||||| || ||||||||||||||||||||| | | ||| ||||||| || ||||||||||| |||||||| | |||||| ||||| | |||||||    
T  31086544 ggagaaattttacttttctcttttaaattacatatattttaaaatg-ttttttaaaatcaactaagtgtgattgaagtagtatatgaacatttat 31086637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 14187120 - 14187157
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatg 197  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  14187120 cttacttttcttttttaaattataaacattataaaatg 14187157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 27739098 - 27739183
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||||||||||||||||||| | | ||||||||| || |||||||||||||||||||| | ||||||||  || |||||||||    
T  27739098 cttacttttctcttttaaattataaatactataaaatg-ttttttaaaatcaattaagtgtgattgaagtatttaatgatcatttat 27739183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 25541939 - 25542008
Alignment:
Q  165 ttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatat 236  Q
    ||||||||||||||||||||||| ||||||||   | |||||||||||||||||||||| | ||| ||||||    
T  25541939 ttttctcttttaaattatagacactataaaat--atttttaaaatcaattaagtgtggttggagtgttatat 25542008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 49832593 - 49832672
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcat 239  Q
    ||||||||||| |||||||||| ||| | |||||| || || || ||||| || |||||||| | |||||||||||||||    
T  49832593 cttacttttcttttttaaattacagataatataaagtgttttttaaaaataaaataagtgtgattgaagtattatatcat 49832672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 2506614 - 2506676
Alignment:
Q  189 tataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttattatat 251  Q
    ||||||||| || || ||||| ||||||||||  | |||||||||||| ||||||||||||||    
T  2506614 tataaaatgttttttcaaaataaattaagtgtttttgaagtattatatgatcatttattatat 2506676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 30010379 - 30010464
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    ||||||||||  |||||||||  |||  ||||| ||| || | |||||| ||||||||||||| |||||||||||| ||| |||||    
T  30010379 ttacttttcttgtttaaattacggactatataacatgtttttctaaaataaattaagtgtggttgaagtattatatgatcgtttat 30010464  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 8529846 - 8529930
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcattta 245  Q
    |||||||||| |||||||||| | ||  ||||| ||| || ||| |||| ||||||||||| | |||||||||||| ||| ||||    
T  8529846 ttacttttcttttttaaattacaaactatataacatgttttttttaaataaattaagtgtgattgaagtattatatgatcgttta 8529930  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 47694401 - 47694481
Alignment:
Q  165 ttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||||||||||||  |||| ||| |||||||| | |||||||||| ||||| ||| |||||||||||| |||||||||    
T  47694401 ttttctcttttaaattacggacactatgaaatgctt-tctaaaatcaatcaagtgcggttgaagtattatatgatcatttat 47694481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 47433906 - 47433820
Alignment:
Q  161 ttacttttctcttttaaattatagac-attataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||||| |||||||||| |||| || |||| ||| || |||||||| ||||||||||| | |||||||||||| ||| |||||    
T  47433906 ttacttttcttttttaaattacagactataataacatgtttttttaaaataaattaagtgtgattgaagtattatatgatcgtttat 47433820  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 41227529 - 41227612
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    ||||||| ||| |||||||||||  ||| ||||||||| | ||||||||  ||||||||||| | |||||||||||| |||||||||    
T  41227529 cttacttctcttttttaaattatgaacaatataaaatg-tcatttaaaa--aattaagtgtgattgaagtattatatgatcatttat 41227612  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 43961459 - 43961542
Alignment:
Q  163 acttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||| | |||||||||||  ||| | ||||||| || |||||||| ||||||||||  | |||||||||||| |||||||||    
T  43961459 acttttattttttaaattatgaacaatgtaaaatgtttttttaaaataaattaagtgtttttgaagtattatatgatcatttat 43961542  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 55510216 - 55510299
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatt 243  Q
    ||||||||||  |||||| ||| ||||| | ||||||| || |||||||| |||||||||||   |||||||||||| ||||||    
T  55510216 cttacttttcatttttaatttaaagacaatgtaaaatgtttttttaaaataaattaagtgtgactgaagtattatatgatcatt 55510299  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 27735803 - 27735877
Alignment:
Q  172 ttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    ||||||||||  |||  ||||| ||| || |||||||| ||||||||||| | |||||||||||| |||||||||    
T  27735803 ttttaaattacggactatataacatgtttttttaaaataaattaagtgtgattgaagtattatatgatcatttat 27735877  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 26166988 - 26167069
Alignment:
Q  165 ttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||| |||||||||| ||||  ||||| ||| || | |||||| ||||||||||| | |||||||||||| ||| |||||    
T  26166988 ttttcttttttaaattacagactatataacatgtttctctaaaataaattaagtgtgattgaagtattatatgatcgtttat 26167069  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 37711194 - 37711275
Alignment:
Q  165 ttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||| ||||||||||  |||  ||||| ||| || | |||||| ||||||||||| | |||||||||||| |||||||||    
T  37711194 ttttcttttttaaattacggactatataacatgtttctctaaaataaattaagtgtgattgaagtattatatgatcatttat 37711275  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 11842355 - 11842444
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttattatat 251  Q
    ||||||||||| ||| |||||| ||||| ||||||||  || ||  |||| |||||||| || | |||||||||||| ||||||||| ||||    
T  11842355 cttacttttctttttcaaattacagacactataaaatatttttt--aaatgaattaagtctgattgaagtattatatgatcatttatcatat 11842444  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 14539355 - 14539407
Alignment:
Q  197 gcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttattat 249  Q
    |||| |||||||| ||||||||||  | |||||||||||| ||||||||||||    
T  14539355 gcttttttaaaataaattaagtgtttttgaagtattatatgatcatttattat 14539407  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 54996874 - 54996792
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||||| |||||||||| |||  |||||||||| ||||| ||||| ||| ||||||| | |||||||||||| |||||||||    
T  54996874 ttacttttcttttttaaattacaga--ttataaaatgtttatt-aaaatgaatgaagtgtgattgaagtattatatgatcatttat 54996792  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 34579859 - 34579896
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatg 197  Q
    |||| |||||||||||||||||||||||||||||||||    
T  34579859 cttatttttctcttttaaattatagacattataaaatg 34579896  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 46204933 - 46205017
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcattta 245  Q
    |||||||||| |||||||||||  ||  ||||| ||| || | |||||| ||||||||||| | |||||||||||| ||||||||    
T  46204933 ttacttttcttttttaaattatgaactatataacatgtttttctaaaataaattaagtgtgattgaagtattatatgatcattta 46205017  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 14898023 - 14898108
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||||| |||||||||| ||||  ||| | ||| || | |||||| ||||||||||| | |||||||||||| ||| |||||    
T  14898023 ttacttttcttttttaaattacagactatatgacatgtttttctaaaataaattaagtgtgattgaagtattatatgatcgtttat 14898108  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 18086026 - 18086063
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatg 197  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  18086026 cttacttttcttttttaaattacagacattataaaatg 18086063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 651778 - 651838
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtg 221  Q
    |||||||||| |||||||||||||||  ||||| ||| || | |||||| |||||||||||    
T  651778 ttacttttcttttttaaattatagactatataacatgtttttctaaaataaattaagtgtg 651838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 28582706 - 28582618
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttattat 249  Q
    |||||||||| ||||||||||  |||  ||||| ||| || | ||| || ||| ||||||||| |||||||||||| ||| ||||||||    
T  28582706 ttacttttcttttttaaattacggacgatataacatgtttttctaagataaatcaagtgtggttgaagtattatattatcgtttattat 28582618  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 33655305 - 33655220
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||||| ||||||||||| | |  ||||| ||| || | |||||| ||||||||||| | |||||||||||| |||||||||    
T  33655305 ttacttttcttttttaaattatgggctatataacatgtttttctaaaataaattaagtgtgattgaagtattatatgatcatttat 33655220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 33224136 - 33224221
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||||||||||| |||| | |||| ||||||||  || ||| ||||||||||| |||| | |||||||||||| | |||||||    
T  33224136 cttacttttctctttttaatttttgacactataaaat-atttttttaaatcaattaaatgtgtttgaagtattatataaacatttat 33224221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 41497154 - 41497069
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||||| ||||||||||  |||  ||||| ||| || | |||||| ||||||||||| | |||| ||||||| |||||||||    
T  41497154 ttacttttcttttttaaattacggactatataacatgtttttctaaaataaattaagtgtgattgaagaattatatgatcatttat 41497069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 18063717 - 18063673
Alignment:
Q  202 tttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||| ||||||||||| | |||||||||||| |||||||||    
T  18063717 tttaaaataaattaagtgtgattgaagtattatatgatcatttat 18063673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 48093981 - 48094025
Alignment:
Q  202 tttaaaatcaattaagtgtggtcgaagtattatatcatcatttat 246  Q
    |||||||| |||||||||||||  ||||||||||| |||||||||    
T  48093981 tttaaaataaattaagtgtggttaaagtattatatgatcatttat 48094025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 34981008 - 34980971
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatg 197  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  34981008 cttacttttcttttttaaattatggacattataaaatg 34980971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 40644140 - 40644084
Alignment:
Q  160 cttacttttctcttttaaattatagacattataaaatgcttatttaaaatcaattaag 217  Q
    |||||||||||||||| |||||  |||| |||||||| ||| ||||||||||||||||    
T  40644140 cttacttttctcttttgaattacggacactataaaat-cttttttaaaatcaattaag 40644084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 33744240 - 33744276
Alignment:
Q  161 ttacttttctcttttaaattatagacattataaaatg 197  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  33744240 ttacttttcttttttaaattatggacattataaaatg 33744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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