View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_32 (Length: 428)
Name: NF1204_low_32
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 1840502 - 1840117
Alignment:
| Q |
14 |
aggtgatcggttgaaaggtaaaccttgtgataaatgagtggatgaaaaactatagctaccattcttagcaacaaatgcatagctacaaaaatcggatgag |
113 |
Q |
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| T |
1840502 |
aggtgatcggttgaaaggtaaaccttgtgataaatgagtggatgaaaaactatagctaccattcttagcaacaaatgcatagctacaaaaatcggatgag |
1840403 |
T |
|
| Q |
114 |
tttttgttgaaattagtagcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttccattattaatca |
213 |
Q |
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| T |
1840402 |
tttttgttgaaattagtagcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttccattattaatca |
1840303 |
T |
|
| Q |
214 |
atctttcatgaccaataacgcttgctaagcaccctgttgttgaatgctcgttttcatcatcgtaactattaaaataaccgtaactgtcataaccaacggt |
313 |
Q |
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| T |
1840302 |
atctttcatgaccaataacgcttgttaagcaccctgttgttgaatgctcgttttcaccatcgtaactattaaaataaccgtaactgtcataaccaacggt |
1840203 |
T |
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| Q |
314 |
tacaaatttgttttctttgcttgaaaagacatatgaatcactagtaagcgtaggtttagtataattatcaacactgcagtacttag |
399 |
Q |
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| T |
1840202 |
tacaaatttgttttctttgcttgaaaagacatatgaatcactagtaagcgtaggtttagtataattatcaacactgcagtacttag |
1840117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 40 - 387
Target Start/End: Complemental strand, 1866409 - 1866062
Alignment:
| Q |
40 |
gtgataaatgagtggatgaaaaactatagctaccattcttagcaacaaatgcatagctacaaaaatcggatgagtttttgttgaaattagtagcttgtat |
139 |
Q |
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| T |
1866409 |
gtgataaatgattggtagaaaaagtatagctaccattcttgacaacaaatgcatagctacaatatagtgatgaattttggttgaaattataagcttctat |
1866310 |
T |
|
| Q |
140 |
acttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttccattattaatcaatctttcatgaccaataacgcttgct |
239 |
Q |
| |
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||||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| | |||||| | |||| | |
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| T |
1866309 |
gcttatattccacattttaggaggaatatcaacttggcagcaccctatacccgaacatgtttcattatcaatcaatcttggaagaccaaaagatcttgtt |
1866210 |
T |
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| Q |
240 |
aagcaccctgttgttgaatgctcgttttcatcatc---gtaactattaaaataaccgtaactgtcataaccaacggttacaaatttgttttctttgcttg |
336 |
Q |
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| T |
1866209 |
aaacaccc---agttgaatacttgttttcaccaccacggtaactattaaaataaccgaaactgttaataccaacagttataaatttgttttctttgcttg |
1866113 |
T |
|
| Q |
337 |
aaaagacatatgaatcactagtaagcgtaggtttagtataattatcaacac |
387 |
Q |
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||| || ||||||| |||| ||||| |||||||| ||||||||| ||||| |
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| T |
1866112 |
aaatgatatatgaaccactgttaagcctaggtttattataattatgaacac |
1866062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 339
Target Start/End: Original strand, 1832524 - 1832823
Alignment:
| Q |
28 |
aaggtaaaccttgtgataaatgagtggatgaaaaactatagctaccattcttagcaacaaatgcatagctacaaaaatcggatgagtttttgttgaaatt |
127 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||| | |||||| |||||||||| |
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| T |
1832524 |
aaggtaaaccttgtgataaatgagtggatgaaaaatcatagctaccattcctaacaacaaatgaatagctacaaaatttggatga---agtgttgaaatt |
1832620 |
T |
|
| Q |
128 |
agtagcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttccattattaatcaatctttcatgacca |
227 |
Q |
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| T |
1832621 |
agaagcttgtatgcttacattcctcattttaggatgaatatcaatttggcaacaccctacacccgaacattttccatcatt------tatttgatcacca |
1832714 |
T |
|
| Q |
228 |
ataacgcttgctaagcaccctgttg---ttgaatgctcgttttcatcatcgtaactattaaaataaccgtaactgtcataaccaacggttacaaatttgt |
324 |
Q |
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| T |
1832715 |
aaagttcttgttaagcaccctgttgaatatgcaatatcgtt---accactgtaactattaaaataaccgtaactg---ttaccaacggttacaaatttgt |
1832808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 9164081 - 9164155
Alignment:
| Q |
131 |
agcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttccatt |
205 |
Q |
| |
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| T |
9164081 |
agcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccatt |
9164155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 9157966 - 9158037
Alignment:
| Q |
131 |
agcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttcc |
202 |
Q |
| |
|
||||| ||||||||||| ||||| |||| |||||||||||||| ||||| || ||||||||||||||||| |
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| T |
9157966 |
agcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttcc |
9158037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 9175916 - 9175990
Alignment:
| Q |
124 |
aattagtagcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatg |
198 |
Q |
| |
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| T |
9175916 |
aattagaagcttgtatagttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatg |
9175990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 9202945 - 9203019
Alignment:
| Q |
124 |
aattagtagcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatg |
198 |
Q |
| |
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| T |
9202945 |
aattagaagattgtatagttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatg |
9203019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 9220418 - 9220487
Alignment:
| Q |
133 |
cttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttcc |
202 |
Q |
| |
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|||||| |||||||| ||||| || | |||||||||||||| ||||| || ||||||||||||||||| |
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| T |
9220418 |
cttgtacacttatattcctcatcatatgtggaatatcaacttgacaacaaccaatacccgaacatgttcc |
9220487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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