View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_33 (Length: 426)
Name: NF1204_low_33
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 132 - 398
Target Start/End: Original strand, 13825424 - 13825690
Alignment:
| Q |
132 |
ataaaaattacatttggtgattgtttgctaggcaaggaacttgttcccctagctaacattgcaatgtcagcagttacatattttaaagatattgcagtat |
231 |
Q |
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| T |
13825424 |
ataaaaattacatttggtgatggtttgctaggcaaggaacttgttcccctggcgaacattgcaatgtcagcagttacatattttaaagatattgcagtat |
13825523 |
T |
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| Q |
232 |
gcaggagacgtactacaaaccataaatttccgatttattcatgttaagtggtcaatttctagtcactatgctaattaatacaaaacaatttactaaaaga |
331 |
Q |
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| T |
13825524 |
gcaagagacgtagtacaaaccatgaatttccgatttattcacgttaagtggtgaatttctaatcactatgttaattaacacaaaacaatttactaaaaga |
13825623 |
T |
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| Q |
332 |
gagggtcattgttatataactacaatttatatggtaaaagaccgctgagatatttcgggtgtaattt |
398 |
Q |
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| T |
13825624 |
gagggtcattgttatgtaactacaatttatatggtaaaagactgcttagatatttcgggtgtaattt |
13825690 |
T |
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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 37240377 - 37240460
Alignment:
| Q |
24 |
aggtcacatgggggttttgatatatttttcttggtttttctctgtacaatttcttattttattctttagcacaacttggctttg |
107 |
Q |
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| T |
37240377 |
aggtaacatgggggttttgagatatttttcttggtgtttctatgtacaatttcttattttattctgtagcaaaacttgggtttg |
37240460 |
T |
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