View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_38 (Length: 410)
Name: NF1204_low_38
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_38 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 295
Target Start/End: Original strand, 36861752 - 36862022
Alignment:
| Q |
30 |
gtatgtagctacttgctattggttaaatattgatttgatttttgtctctcacaaactatagtgtatcagatttcatatttggttttgttcctaaaaagta |
129 |
Q |
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| T |
36861752 |
gtatgtagctacttgctattggttaaatattgatttgatttttgtctctcacaaactatagtgtatcagatttcttatttggttttgttcctaaaaagta |
36861851 |
T |
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| Q |
130 |
tagaaaattgtgtttttattcttattatttttagtgtctgtcgtaactatgttccaagagttttagaatttggaggatttaaac-----tcatatgcttc |
224 |
Q |
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| T |
36861852 |
tagaaaattgtgtttttattcttattatttttagtgtctgtcgtaactatgttccaagagttttagaatttggaggatttaaactcatatcatatgcttc |
36861951 |
T |
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| Q |
225 |
caaacgattcattttaaaactcgttaatcacttgagttgagtttaaccacacttaggtggttagttaaagg |
295 |
Q |
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| T |
36861952 |
caaacaattcattttgaaactcgttaattacttgagttgaatttaaccacacttaggtggttagttaaagg |
36862022 |
T |
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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 32898587 - 32898632
Alignment:
| Q |
365 |
ctttgtcctgaaccaagttcaccttcttcagtttaccttccacctc |
410 |
Q |
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| T |
32898587 |
ctttgtcctgaaccaagttcaccttcttcagtttaccttccacctc |
32898632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 46312452 - 46312497
Alignment:
| Q |
365 |
ctttgtcctgaaccaagttcaccttcttcagtttaccttccacctc |
410 |
Q |
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| T |
46312452 |
ctttgtccagaaccaagttcaccttcttccgtttatcttccacctc |
46312497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 20409886 - 20409844
Alignment:
| Q |
368 |
tgtcctgaaccaagttcaccttcttcagtttaccttccacctc |
410 |
Q |
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| T |
20409886 |
tgtccagaaccaagttcaccttcttccgtttatcttccacctc |
20409844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 17414931 - 17414973
Alignment:
| Q |
368 |
tgtcctgaaccaagttcaccttcttcagtttaccttccacctc |
410 |
Q |
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| T |
17414931 |
tgtccagaaccaagttcaccttcttccgtttatcttccacctc |
17414973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 40169027 - 40169069
Alignment:
| Q |
368 |
tgtcctgaaccaagttcaccttcttcagtttaccttccacctc |
410 |
Q |
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| T |
40169027 |
tgtccagaaccaagttcaccttcttccgtttatcttccacctc |
40169069 |
T |
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