View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_low_39 (Length: 409)
Name: NF1204_low_39
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 19185493 - 19185785
Alignment:
| Q |
9 |
gaaaagaatttgggtttagaaggaaagtggttattgaagagtggaagaacaataaggttgaatgagttccctccaccaatttcatgcatagggagaagtg |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19185493 |
gaaaagaatctgggtttagaaggaaagtggttatggaagagtggaagaacaaaaaggttgaatgagtaccctccaccaatttcatgcatagggagaagtg |
19185592 |
T |
|
| Q |
109 |
gaaagccttgtgttaggttcaaatcttatagggagaatggaaggtttattcttaaacaaatacctatacaagattttcttcatgctcgtagagaagatgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
19185593 |
gaaagccttgtgttaggttcaaatcttatagggagaatggaaggtttattcttaaacaaataccaatacaagattttcttcatgctcatagagaagatgg |
19185692 |
T |
|
| Q |
209 |
aagactcaccttgcattttattcagcatgatgtagaggaacaagannnnnnnggagataaagaagattttgatgggagtggagaaagtaattc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19185693 |
aagactcaccttgcattttattcagcatgatgtagaggaacaaaatttctttggagataaagaagattttgatgggagtggagaaagtaattc |
19185785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University