View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_low_4 (Length: 744)
Name: NF1204_low_4
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 80 - 715
Target Start/End: Complemental strand, 4345571 - 4344931
Alignment:
| Q |
80 |
agatgaatcaaatcgcatcgttctaaaactgggtcacgctcaccaaatgtaatttaagcagtcggtgactaaaagcaaaatttatgatgattgtatgaaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4345571 |
agatgaatcaaatcgcatcgttctaaaactgggtcacgctcaccaaatgtaatttaagcagtcggtgactaaaagcaaaatttatgatgattgtatgaaa |
4345472 |
T |
|
| Q |
180 |
aatatctatatgtttatagaagatgctttaaaaagaaaaatat----ttctaggattccattatttcaattattaaatgtttatacctatatagcaaaag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4345471 |
aatatctatatgtttatagaagatgctttaaaaaaatatatatatatttctaggattccattatttcaattattaaatgtttatacctatatagcaaaag |
4345372 |
T |
|
| Q |
276 |
aaatgcaaacacttgcatgtatttcgcaacagttctacagatatcacattatcatgtaatcgatacatgaata-taattcaactaccaaaactataagac |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
4345371 |
aaatgcaaacacttgcatgtatttcgcaacagttctaaagatatcacattatcatgtaatcgatacatgaataataattcaactaccaaaactataagac |
4345272 |
T |
|
| Q |
375 |
attagagtataactatcagacacatgcaaaagagagggtgaaacctgtaagatcctctctttgagaacattggagattaggaaactcgttcccatgtgaa |
474 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||| |||| |
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|
| T |
4345271 |
attaaagtataactatcagacacatgcaagagagagagcgaaacctgtaagataatctctttgagaatattggagattaggcaactcattcccatctgaa |
4345172 |
T |
|
| Q |
475 |
ttagaagagatttcatggattttgttgttgttgtatcttccacttgaccacgacattcaattaatgaagaagtcttcacatctgatacttgtgatgtagt |
574 |
Q |
| |
|
||| |||||||| || ||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |
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|
| T |
4345171 |
ttaaaagagattccaaggaattttgtgttgttgtatcttgcacttgaccacgacattcaattaatgaagtcgtcttcacatctgacacttgggatgtagt |
4345072 |
T |
|
| Q |
575 |
tgcagttgattccaattccgtagaacttgttgcacctaaagcattcaaaatacttgttgcatcttgtgatagttgaagttctgatccacattcgagccaa |
674 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4345071 |
tgcagttgattccaattccgtagaacttgttgcacttaaggcatgcaaaatacttgttgcatcttgtgatagttgaagttctgatccacattcgagccaa |
4344972 |
T |
|
| Q |
675 |
agactttgaagcttcggaaggacattggaaatagatgatat |
715 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
4344971 |
agactttgaagcttcggaaagacattggaaatagatgatat |
4344931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 382 - 715
Target Start/End: Complemental strand, 4361695 - 4361362
Alignment:
| Q |
382 |
tataactatcagacacatgcaaaagagagggtgaaacctgtaagatcctctctttgagaacattggagattaggaaactcgttcccatgtgaattagaag |
481 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
4361695 |
tataactattaaacacatgcaagagagagggtgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccatctgaattagaag |
4361596 |
T |
|
| Q |
482 |
agatttcatggattttgttgttgttgtatcttccacttgaccacgacattcaattaatgaagaagtcttcacatctgatacttgtgatgtagttgcagtt |
581 |
Q |
| |
|
|||||||||| | ||| |||||| || |||| || |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4361595 |
agatttcatgtaattttttgttgctgaatctggcatttgatcacaacattcaattaatgaagaagtcttcacctctgatacttgtgatgtagttgcagtt |
4361496 |
T |
|
| Q |
582 |
gattccaattccgtagaacttgttgcacctaaagcattcaaaatacttgttgcatcttgtgatagttgaagttctgatccacattcgagccaaagacttt |
681 |
Q |
| |
|
|||||||||||| | ||| ||||||||| ||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| |||||||| |||| |
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|
| T |
4361495 |
gattccaattccttggaatttgttgcacttaaagcattcaaaattattgctgtgtcctgtgaaagttgaagttctgatccacattccagccaaaggcttt |
4361396 |
T |
|
| Q |
682 |
gaagcttcggaaggacattggaaatagatgatat |
715 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
4361395 |
gaagcttcggaaggacataagaaatagatgatat |
4361362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 382 - 714
Target Start/End: Complemental strand, 4335936 - 4335607
Alignment:
| Q |
382 |
tataactatcagacacatgcaaaagagagggtgaaacctgtaagatcctctctttgagaacattggagattaggaaactcgttcccatgtgaattagaag |
481 |
Q |
| |
|
||||||||| ||||| |||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
4335936 |
tataactattagacaaatgcaaaagaaagagtgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccatttgaatcagaag |
4335837 |
T |
|
| Q |
482 |
agatttcatggattttgttgttgttgtatcttccacttgaccacgacattcaattaatgaagaagtcttcacatctgatacttgtgatgtagttgcagtt |
581 |
Q |
| |
|
|||||||||| | ||| ||| || || ||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4335836 |
agatttcatgcaattttttgctggtgaatcttgcacttgactgcgacattcaattagtgaag---tcttcacatctgatacttgtgatgtagttgcagtt |
4335740 |
T |
|
| Q |
582 |
gattccaattccgtagaacttgttgcacctaaagcattcaaaatacttgttgcatcttgtgatagttgaagttctgatccacattcgagccaaagacttt |
681 |
Q |
| |
|
|||| ||||||| ||||| ||| ||||| ||| ||||||||||| ||||||| |||||||| |||||||||||||||||||| || | |||||| | || |
|
|
| T |
4335739 |
gatttcaattccttagaatttgctgcacataatgcattcaaaattcttgttgtgtcttgtgaaagttgaagttctgatccacactcaaaccaaaggcatt |
4335640 |
T |
|
| Q |
682 |
gaagcttcggaaggacattggaaatagatgata |
714 |
Q |
| |
|
|||| || |||||||| ||| ||| |||||||| |
|
|
| T |
4335639 |
gaagtttaggaaggactttgaaaacagatgata |
4335607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 382 - 714
Target Start/End: Original strand, 4123400 - 4123734
Alignment:
| Q |
382 |
tataactatcagacacatgcaaaagagagggtg--aaacctgtaagatcctctctttgagaacattggagattaggaaactcgttcccatgtgaattaga |
479 |
Q |
| |
|
||||||||||||| |||||||| |||||| | | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
4123400 |
tataactatcagaaacatgcaagagagagagagcgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccatttgaattaga |
4123499 |
T |
|
| Q |
480 |
agagatttcatggattttgttgttgttgtatcttccacttgaccacgacattcaattaatgaagaagtcttcacatctgatacttgtgatgtagttgcag |
579 |
Q |
| |
|
|||||||||||| | ||| |||||| || ||||| || |||| ||| |||||| ||||||||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
4123500 |
agagatttcatgcaattttttgttgctgaatcttgcatttgatcacaacattccattaatgaacaagtcttcacattggatacttgtgacgtagttgcaa |
4123599 |
T |
|
| Q |
580 |
ttgattccaattccgtagaacttgttgcacctaaagcattcaaaatacttgttgcatcttgtgatagttgaagttctgatccacattcgagccaaagact |
679 |
Q |
| |
|
||||||||||| || | ||| |||||| || ||||||||||||||| ||||||| || ||||| |||||||||||||||||||| || | |||||| | |
|
|
| T |
4123600 |
ttgattccaatcccttggaatttgttgaacttaaagcattcaaaattcttgttgtgtcctgtgaaagttgaagttctgatccacactccaaccaaaggca |
4123699 |
T |
|
| Q |
680 |
ttgaagcttcggaaggacattggaaatagatgata |
714 |
Q |
| |
|
||||| || ||||||||| || ||||||| |||| |
|
|
| T |
4123700 |
ctgaagttttggaaggacactgaaaatagacgata |
4123734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 393 - 714
Target Start/End: Original strand, 4320100 - 4320417
Alignment:
| Q |
393 |
gacacatgcaaaagaga--gggtgaaacctgtaagatcctctctttgagaacattggagattaggaaactcgttcccatgtgaattagaagagatttcat |
490 |
Q |
| |
|
||||||||||| ||||| | ||||||||| ||||||||||||||| |||| ||||| ||||||| | || ||||||| |||| || |||||||||||| |
|
|
| T |
4320100 |
gacacatgcaagagagatagagtgaaacctttaagatcctctctttcagaatattggtgattagggagttcattcccatttgaaataaaagagatttcat |
4320199 |
T |
|
| Q |
491 |
ggattttgttgttgttgtatcttccacttgaccacgacattcaattaatgaagaagtcttcacatctgatacttgtgatgtagttgcagttgattccaat |
590 |
Q |
| |
|
||| |||| || |||| | ||| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4320200 |
ggaatttggagtggttgaaactttcacttgactgcgacattcaattaatgaa------ttcacatctggtacttgtgatgtagttgcagttgattccaat |
4320293 |
T |
|
| Q |
591 |
tccgtagaacttgttgcacctaaagcattcaaaatacttgttgcatcttgtgatagttgaagttctgatccacattcgagccaaagactttgaagcttcg |
690 |
Q |
| |
|
||| ||||||||| | ||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
4320294 |
tccatagaacttgctacacttaaagcattcacaattcgtgttgcatcttgtgatagttgaagttctgatccacatgtcagccaaaggctttgaagctttg |
4320393 |
T |
|
| Q |
691 |
gaaggacattggaaatagatgata |
714 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
4320394 |
gaaggacaatggaaatagatgata |
4320417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 4361788 - 4361728
Alignment:
| Q |
314 |
agatatcacattatcatgtaatcgataca-tgaatataattcaactaccaaaactataaga |
373 |
Q |
| |
|
||||||||||||||||| ||||||||| | | || |||||||||||||||||||||||||| |
|
|
| T |
4361788 |
agatatcacattatcatataatcgatatactaaaaataattcaactaccaaaactataaga |
4361728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 4336103 - 4336014
Alignment:
| Q |
100 |
ttctaaaactgggtcacgctcac-caaatgtaatttaagcagtcggtgactaaaagcaaaatttatgatgattgtatgaaaaatatctata |
189 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| | ||||||| ||| | ||||||||| |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
4336103 |
ttcttaaactcggtcacgctcatgcaaatattatttaagtagttg-tgactaaaaccaaaatttgtgatgattgtatgaaaaaaatctata |
4336014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 714
Target Start/End: Original strand, 5073570 - 5073703
Alignment:
| Q |
581 |
tgattccaattccgtagaacttgttgcacctaaagcattcaaaatacttgttgcatcttgtgatagttgaagttctgatccacattcgagccaaagactt |
680 |
Q |
| |
|
|||||| ||||| ||||| |||| ||| ||| |||| |||||| ||| ||||||||| || |||||||||| |||||| ||||| | |||||||| | |
|
|
| T |
5073570 |
tgattcgaattctttagaatttgtggcatataaggcatccaaaattctttctgcatcttgagaaagttgaagttttgatccgcattccacccaaagacat |
5073669 |
T |
|
| Q |
681 |
tgaagcttcggaaggacattggaaatagatgata |
714 |
Q |
| |
|
||||| |||||| ||||||||||||||||| |
|
|
| T |
5073670 |
cgaagccatggaaggtaattggaaatagatgata |
5073703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 533 - 599
Target Start/End: Original strand, 5354228 - 5354294
Alignment:
| Q |
533 |
aattaatgaagaagtcttcacatctgatacttgtgatgtagttgcagttgattccaattccgtagaa |
599 |
Q |
| |
|
|||||||| | ||||||||| ||| | | | ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
5354228 |
aattaatgtaaaagtcttcatatcaggtgcatgtgatgtagttgcagttgattcaaattccttagaa |
5354294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 686
Target Start/End: Complemental strand, 5279036 - 5278883
Alignment:
| Q |
533 |
aattaatgaagaagtcttcacatctgatacttgtgatgtagttgcagttgattccaattccgtagaacttgttgcacctaaagcattcaaaatacttgtt |
632 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||||| |||| | ||| || || | |||| ||||| |||| ||| |||||||| |||||| || || |
|
|
| T |
5279036 |
aattaatgcagaagtgttcatatttgatacttgtgaagtagcagaagtcgaatcaatttccttagaaattgtggcatataaagcatccaaaatgattttt |
5278937 |
T |
|
| Q |
633 |
gcatcttgtgatagttgaagttctgatccacattcgagccaaagactttgaagc |
686 |
Q |
| |
|
|||||| || |||||||||||||| ||||| || | ||| |||||| ||||| |
|
|
| T |
5278936 |
gcatctacagaaagttgaagttctgaaccacactctacccatagacttcgaagc |
5278883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 593
Target Start/End: Complemental strand, 8878067 - 8878007
Alignment:
| Q |
533 |
aattaatgaagaagtcttcacatctgatacttgtgatgtagttgcagttgattccaattcc |
593 |
Q |
| |
|
|||||||| |||||| || | || |||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
8878067 |
aattaatgcagaagtttttatatttgatacttgtgatgtagtagcagctgattccaattcc |
8878007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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