View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_45 (Length: 394)
Name: NF1204_low_45
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 45211843 - 45211488
Alignment:
| Q |
1 |
caactcagattcacctggaaatttcacaaacatttctgccctactctccgctttcacatataaccctattcttctactgttttctcaccaacaaacaaaa |
100 |
Q |
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| T |
45211843 |
caactcagattcacctggaaatttcacaaacatttctgccctactctccgctttcacatataaccctattcttctactgttttctcaccaacaaacaaaa |
45211744 |
T |
|
| Q |
101 |
tgtttttcttccctttccttaaacactgtccatgcatgcttatgttcctcttgtttactttgtttttcacttcaacaggttttttcttcttctatttatt |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45211743 |
tgtttttcttccctttccttaatcactgtccatgcatgcttatgttcctcttgtttactttgtttttcacttcaacaggttttttcttcttctatttttt |
45211644 |
T |
|
| Q |
201 |
ccttgtgcatgttcctcttgtttacgttgtttgagattgatgtgaatttgtatatatggccggtagttatcttgtttcgtcggtatcgaagtaggtttta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45211643 |
ccttgtgcatgttcctcttgtttacgttgtttgagattgatgtgaatttgtatatatggccggtagttatcttgtttcgtctgtatcgaagtaggtttta |
45211544 |
T |
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| Q |
301 |
tgatttaattttttgagcctggttttggccgttttcggtttagttgattgccacag |
356 |
Q |
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| T |
45211543 |
tgatttaattttttgagcctggttttggccgttttcggtttagttgattgccacag |
45211488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 5544026 - 5543935
Alignment:
| Q |
90 |
aacaaacaaaatgtttttcttccctttccttaaacactgtccatgcatgcttatgttcctcttgtttactttgtttttcacttcaacaggtt |
181 |
Q |
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| T |
5544026 |
aacaaaaacaatgttgttcatccctttccttaaacattgtccatgcatgcttttgttcctattgtttacgttgttttacacttcaacaggtt |
5543935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 5548220 - 5548295
Alignment:
| Q |
106 |
ttcttccctttccttaaacactgtccatgcatgcttatgttcctcttgtttactttgtttttcacttcaacaggtt |
181 |
Q |
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||||||| |||||||||||| |||||||||||| ||| |||||| | ||||| |||| | |||||||||||||| |
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| T |
5548220 |
ttcttccatttccttaaacattgtccatgcatgtttacgttcctgatatttacactgttctacacttcaacaggtt |
5548295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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