View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_49 (Length: 384)
Name: NF1204_low_49
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 13825411 - 13825057
Alignment:
| Q |
18 |
taataagtagatttgtttggcgaacatgtcctcgcctaacaaatttagcagaaaacaatgtttttcaattgtaagtttattatcaatgcaaaactttaac |
117 |
Q |
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| T |
13825411 |
taataagtagatttgtttggcgaacatggcctcgcctaacaaatttagcagacaacaatgtttttcaattttaagtttattatcaatgcaaaactttaac |
13825312 |
T |
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| Q |
118 |
tccttccaaaacttaatctattgataagtacttaaaaactataatttgttgaaaacaaaagcaaggaataaaaatttggattgtctttcaataagcactt |
217 |
Q |
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| T |
13825311 |
tccttccaaaacttaatctattgataagtacttaaaaactataaattgttcaaaacaaaagcaaggaataaaaaattggattgtctttcaataagaactt |
13825212 |
T |
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| Q |
218 |
attttatgtcatcgacttgacatattctttgttaggatgaccaaaatgagaccgataacacaccatctttcgttttcctttagtttgggaggagtttcat |
317 |
Q |
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| T |
13825211 |
attttatgtcatcgacttgacatattctttgttaggatgaccaaaatgagacagataacacaccatctttcgttttcctttagtttgggaggagttccat |
13825112 |
T |
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| Q |
318 |
gaatttgtgatacatgtgatgtgaaacccatattctccccggtttcttatatatt |
372 |
Q |
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| T |
13825111 |
gaatttgtgatacatgtgatgtgaaacccatattctccccggtttcttatatatt |
13825057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 4078407 - 4078338
Alignment:
| Q |
67 |
agaaaacaatgtttttcaattgtaagtttattatcaatgcaaaactttaactccttccaaaacttaatcta |
137 |
Q |
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| T |
4078407 |
agaaaacatagtttttcaacttcaatttcattgtcaatgcaaaactt-aactccttccaaaacttaatcta |
4078338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 4101160 - 4101091
Alignment:
| Q |
67 |
agaaaacaatgtttttcaattgtaagtttattatcaatgcaaaactttaactccttccaaaacttaatcta |
137 |
Q |
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| T |
4101160 |
agaaaacatagtttttcaacttcaatttcattgtcaatgcaaaactt-aactccttccaaaacttaatcta |
4101091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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