View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_low_51 (Length: 370)
Name: NF1204_low_51
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_51 |
 | |
|
| [»] scaffold0483 (2 HSPs) |
| | |
|
| [»] scaffold0109 (2 HSPs) |
| | |
|
| [»] scaffold0018 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 174 - 357
Target Start/End: Complemental strand, 14647573 - 14647390
Alignment:
| Q |
174 |
aactctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatggaaaactcagatacgcgtcagataactatggaggaag |
273 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14647573 |
aactctacaaagtgtcgtccatcatgggtgttagctcttaaatcattggtggaagtgcaaatggaaaactcagatacgcgtcagataactatggaggaag |
14647474 |
T |
|
| Q |
274 |
gtatttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaaatacagaaataggtgtct |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |
|
|
| T |
14647473 |
gtatttttggtgaagaacagtataatgaagaaattaccaaagaacaaatgtatgagtttttcaacaatacagaaataggtgtct |
14647390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 14647746 - 14647619
Alignment:
| Q |
1 |
tattttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
14647746 |
tattttagattcaaacacaaaaattgcatgaaggcactaaaatcatcaaggataaaccaagaaatatgtctcatgcacaaaagttgaaagaagtcaataa |
14647647 |
T |
|
| Q |
101 |
taagggtagacatagcaatattccaatc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14647646 |
taagggtagacatagcaatattccaatc |
14647619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 174 - 357
Target Start/End: Complemental strand, 14694048 - 14693865
Alignment:
| Q |
174 |
aactctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatggaaaactcagatacgcgtcagataactatggaggaag |
273 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14694048 |
aactctacaaagtgtcgtccatcatgggtgtcagctcttaaatcattggtggaagtgcaaatggaaaactcagatacgcgtcaggtaactatggaggaag |
14693949 |
T |
|
| Q |
274 |
gtatttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaaatacagaaataggtgtct |
357 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
14693948 |
gtatttttggtgaagagcagtataatgaagaaattaccaaagaacagatgtatgagtttttcgaaaatacagaaataggtgtct |
14693865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 14694220 - 14694093
Alignment:
| Q |
1 |
tattttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14694220 |
tattttagattcaaacacaaaaattgcatgaaggcacaaaaatcatcaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
14694121 |
T |
|
| Q |
101 |
taagggtagacatagcaatattccaatc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14694120 |
taagggtagacatagcaatattccaatc |
14694093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0483 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: scaffold0483
Description:
Target: scaffold0483; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 174 - 357
Target Start/End: Complemental strand, 3448 - 3265
Alignment:
| Q |
174 |
aactctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatggaaaactcagatacgcgtcagataactatggaggaag |
273 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
3448 |
aactctacaaagtgccgtccatcatgggtgtcagcttttaaatcattggtggaagtgcaaatggaaaactcagatacacgtcaggtaactatggaggaag |
3349 |
T |
|
| Q |
274 |
gtatttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaaatacagaaataggtgtct |
357 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
3348 |
gtatttttggtgaagagcagtataatgaggaaattaccaaagaacaaatgtatgaatttgtcgaaaatacagaaataggtgtct |
3265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0483; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 3621 - 3494
Alignment:
| Q |
1 |
tattttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621 |
tattttatattcaaacacaaaaattgcatgaaggcacaaaaatcatcaaggataaaccaaggaatatgtctcaagcacaaaagttgaaagaagtcactaa |
3522 |
T |
|
| Q |
101 |
taagggtagacatagcaatattccaatc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
3521 |
taagggtagacatagcaatattccaatc |
3494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0109 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: scaffold0109
Description:
Target: scaffold0109; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 174 - 357
Target Start/End: Complemental strand, 48288 - 48105
Alignment:
| Q |
174 |
aactctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatggaaaactcagatacgcgtcagataactatggaggaag |
273 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
48288 |
aactctacaaagtgccgtccatcatgggtgtcagcttttaaatcattggtggaagtgcaaatggaaaactcagatacacgtcaggtaactatggaggaag |
48189 |
T |
|
| Q |
274 |
gtatttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaaatacagaaataggtgtct |
357 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
48188 |
gtatttttggtgaagagcagtataatgaggaaattaccaaagaacaaatgtatgaatttgtcgaaaatacagaaataggtgtct |
48105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0109; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 48461 - 48334
Alignment:
| Q |
1 |
tattttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48461 |
tattttatattcaaacacaaaaattgcatgaaggcacaaaaatcatcaaggataaaccaaggaatatgtctcaagcacaaaagttgaaagaagtcactaa |
48362 |
T |
|
| Q |
101 |
taagggtagacatagcaatattccaatc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
48361 |
taagggtagacatagcaatattccaatc |
48334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 175 - 357
Target Start/End: Original strand, 6765611 - 6765796
Alignment:
| Q |
175 |
actctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatg---gaaaactcagatacgcgtcagataactatggagga |
271 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
6765611 |
actctacaaattgtcgtccatcgtgggtgtttgctcttaaatcactggtggcagtgcaaatgatggaaaacacagatacgcgtcagataactatggagga |
6765710 |
T |
|
| Q |
272 |
aggtatttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaaatacagaaataggtgtct |
357 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
6765711 |
aagtatttttggtgaagaacagtatcatgaaaacattaccaaaaaacaaatgtatgagtttttcgaaagtacagaaataggtgtct |
6765796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 175 - 357
Target Start/End: Original strand, 6788041 - 6788226
Alignment:
| Q |
175 |
actctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatg---gaaaactcagatacgcgtcagataactatggagga |
271 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||| ||||||||||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
6788041 |
actctacaaattgtcgtccatcgtgggtgtttgctcttaaatcactggtggcagtgcaaatgatggaaaacacagatatgcgtcagataactatggagga |
6788140 |
T |
|
| Q |
272 |
aggtatttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaaatacagaaataggtgtct |
357 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
6788141 |
aagtatttttggtgaagaacagtatcatgaaaacattaccaaagaacaaatgcatgagttttttgaaagtacagaaataggtgtct |
6788226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 6765440 - 6765567
Alignment:
| Q |
1 |
tattttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
100 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6765440 |
tattttagattcaaatacaaaaattgcatgaaagtactaaaatcatgaagaataaaccaagaaatatgtctccagcacaaaagttgaaagaagtcactaa |
6765539 |
T |
|
| Q |
101 |
taagggtagacatagcaatattccaatc |
128 |
Q |
| |
|
||||||| ||||| | ||||||| |||| |
|
|
| T |
6765540 |
taagggtggacatggaaatattcaaatc |
6765567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 6787870 - 6787997
Alignment:
| Q |
1 |
tattttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
100 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
6787870 |
tattttagattcaaatacaaaaattgcatgaaagtactaaaatcatgaagaataaaccaagaaatatgtctccagtacaaaagttgaaagaagtcactaa |
6787969 |
T |
|
| Q |
101 |
taagggtagacatagcaatattccaatc |
128 |
Q |
| |
|
||||||| ||||||| ||||||| |||| |
|
|
| T |
6787970 |
taagggtggacatagaaatattcaaatc |
6787997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 177 - 357
Target Start/End: Complemental strand, 28621230 - 28621051
Alignment:
| Q |
177 |
tctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatggaaaactcagatacgcgtcagataactatggaggaaggta |
276 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||| || || |||||| |||| |||||||||||||| ||| |
|
|
| T |
28621230 |
tctacaaagtgtcgtccatcgtgggtgtcaactcttaaatcaccggtggaagtgcaaatggaagacacaaatacgcttcaggtaactatggaggaatgta |
28621131 |
T |
|
| Q |
277 |
tttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaaatacagaaataggtgtct |
357 |
Q |
| |
|
|||||| |||||| ||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28621130 |
tttttgttgaagagcagtatgat-aagacattaccaaagaccaaatgtatgagtttttcgaaaatacagaaataggtgtct |
28621051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 174 - 339
Target Start/End: Original strand, 28620650 - 28620815
Alignment:
| Q |
174 |
aactctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatggaaaactcagatacgcgtcagataactatggaggaag |
273 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||| ||| | ||||||||||| || ||||||| ||||| |||| ||||||||||| |
|
|
| T |
28620650 |
aactctacaaagtgtcgtccattgtgggtgtcagctcttaaatcactgttggcattgcaaatggaagacacagatacccgtcatataattatggaggaag |
28620749 |
T |
|
| Q |
274 |
gtatttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaa |
339 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
28620750 |
gtatttttggtgaagaacagtacgaagaagacattaccaaagaacaaatgtatgagtttttcgaaa |
28620815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 28621406 - 28621279
Alignment:
| Q |
1 |
tattttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
100 |
Q |
| |
|
||||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28621406 |
tattttagattcacccacaaaaattgtatgaaggcactaaaatcatgaaggataaaccaaaaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
28621307 |
T |
|
| Q |
101 |
taagggtagacatagcaatattccaatc |
128 |
Q |
| |
|
|||| || |||||||||||||||||||| |
|
|
| T |
28621306 |
taagagtggacatagcaatattccaatc |
28621279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 28620491 - 28620613
Alignment:
| Q |
1 |
tattttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
100 |
Q |
| |
|
||||||||||| | || ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28620491 |
tattttagattcacccataaacattgcttgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
28620590 |
T |
|
| Q |
101 |
taagggtagacatagcaatattc |
123 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
28620591 |
taagggtgaacatagcaatattc |
28620613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 125969 - 125842
Alignment:
| Q |
1 |
tattttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcactaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
125969 |
tattttagattcaaacacaaaaattgcatgaaggcacaaaaatcatccaggataaaccaagaaatatgtctcaagcacaaaagttgaaagaagtcaccaa |
125870 |
T |
|
| Q |
101 |
taagggtagacatagcaatattccaatc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
125869 |
taagggtagacatagcaatattccaatc |
125842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 125796 - 125704
Alignment:
| Q |
174 |
aactctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatggaaaactcagatacgcgtcagataactatg |
266 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
125796 |
aactctacaaagtgtcgtccatcatgggtgtcagctcttaaatcattggtggaagtgcaaatggaaaactcagatacgcgtcaggtaactatg |
125704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 125707 - 125674
Alignment:
| Q |
324 |
tatgagtttttcgaaaatacagaaataggtgtct |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
125707 |
tatgagtttttcgaaaatacagaaataggtgtct |
125674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 357
Target Start/End: Original strand, 20028019 - 20028197
Alignment:
| Q |
176 |
ctctacaaagtgtcgtccatcatggatgtcagctcttaaatcactggtggaagtgcaaatggaaaactcagatacgcgtcagataactatggaggaaggt |
275 |
Q |
| |
|
||||| |||||||| | ||||||| ||| || ||| ||||| || || ||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
20028019 |
ctctataaagtgtcattcatcatgtgtgttagttctaaaatcccttgtagaaatgcaaatggaaaacacagatacgcgtcagataactatggatgaaggt |
20028118 |
T |
|
| Q |
276 |
atttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaaatacagaaataggtgtct |
357 |
Q |
| |
|
||||||||| ||||| ||||| |||| |||| |||||| ||| | |||||||||| ||||||||||||||| |||||| |
|
|
| T |
20028119 |
atttttggt---gaacaatatgaacaagacattatcaaagagcaactgaatgagttttttgaaaatacagaaataagtgtct |
20028197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 20027839 - 20027938
Alignment:
| Q |
5 |
ttagattaaaacacaaaaattgcatgaagacactaaaatcatgaaggataaaccaagaaatatg---tctcaagcacaaaagttgaaagaagtcactaat |
101 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| || ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||| |
|
|
| T |
20027839 |
ttagattcaaacacataaattgcgtgaaggcagtaaaatcatgaaggataaaccaagaaatatggcagctcaaacacaaaaattgaaagaaaacactaat |
20027938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 8363024 - 8362934
Alignment:
| Q |
262 |
ctatggaggaaggtatttttggtgaagaacagtatgatgaagaaattaccaaagaacaaatatatgagtttttcgaaaatacagaaataggtgt |
355 |
Q |
| |
|
|||||||||| |||||||||| | || || ||||| |||||| ||| |||||| ||||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
8363024 |
ctatggaggatggtatttttgataaa---cattatgaagaagaagttatcaaagagcaaatgaatgattttttccaaaatacagaaataggtgt |
8362934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University