View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_52 (Length: 370)
Name: NF1204_low_52
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 44168611 - 44168741
Alignment:
| Q |
19 |
acatgtcataaataagctgtttccataatcactttcaaacagtcttaaaagtgcttatgtaagataggcttaaataagcaaatccaagccgactctagat |
118 |
Q |
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| T |
44168611 |
acatgtcataaataagctgtttccataatcacttccaaacagtcttaaaagtgcttatgtaagataggcttaaataagcaaatccaagcggactctagat |
44168710 |
T |
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| Q |
119 |
actaataacattgctcatttctattccatga |
149 |
Q |
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| T |
44168711 |
actaataacattgctcatttctattccatga |
44168741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 44168897 - 44169006
Alignment:
| Q |
233 |
tctatcatggaaactacactgcacttggtcatctgtatgaattttaagttttcatccattcttttcttgcagatatgtctccattgctgaaatcatagat |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44168897 |
tctatcatggaaactacactgcacttggtcatctgtatcaattttaagttttcttccattcttttcttgcagatatgtctccattgctgaaatcatagat |
44168996 |
T |
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| Q |
333 |
atctcgtctt |
342 |
Q |
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|||||||||| |
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| T |
44168997 |
atctcgtctt |
44169006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 44168807 - 44168871
Alignment:
| Q |
169 |
atatgtaattgagttaatttccttttatctcgtaataatagcaatgtctgtaacttctaaactgt |
233 |
Q |
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| T |
44168807 |
atatgtaattgagttaatttccttttatctcgtaataatagcaatgtctgtaacttctaaactgt |
44168871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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