View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_54 (Length: 367)

Name: NF1204_low_54
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_54
NF1204_low_54
[»] scaffold0044 (1 HSPs)
scaffold0044 (65-275)||(34648-34858)
[»] scaffold0488 (1 HSPs)
scaffold0488 (65-275)||(5313-5523)
[»] chr5 (1 HSPs)
chr5 (67-275)||(6089711-6089919)


Alignment Details
Target: scaffold0044 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 65 - 275
Target Start/End: Original strand, 34648 - 34858
Alignment:
Q  65 gggagaattgtatgtatattatttcttctatgaattattttgctactcatgtatttagagaggggaatgcatgtgctgattctctagccagtctaggatt 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34648 gggagaattgtatgtatattatttcttctatgaatttttttgctactcatgtatttagagaggggaatgcatgtgcagattctctagccagtctaggatt 34747  T
Q  165 aactcttgatcaccttaagatttggtttgatgctcgtggctgtatcaagtcttccttagctaggaacaaaactgggatgccagagtatcgttttgtaact 264  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34748 aactcttgatcaccttaagatttgatttgatgctcctggctgtatgaagtcttccttagctaggaacaaaactgggatgccagagtatcgttttgtaact 34847  T
Q  265 ttctaaggagg 275  Q
    |||||||||||    
T  34848 ttctaaggagg 34858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 65 - 275
Target Start/End: Complemental strand, 5523 - 5313
Alignment:
Q  65 gggagaattgtatgtatattatttcttctatgaattattttgctactcatgtatttagagaggggaatgcatgtgctgattctctagccagtctaggatt 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5523 gggagaattgtatgtatattatttcttctatgaatttttttgctactcatatatttagagaggggaatgcatgtgctgattctctagccagtctaggttt 5424  T
Q  165 aactcttgatcaccttaagatttggtttgatgctcgtggctgtatcaagtcttccttagctaggaacaaaactgggatgccagagtatcgttttgtaact 264  Q
    | ||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5423 atctcttgatcaccttaagatttggtttgatgctcctgactttattaagtcttccttagctaggaacaaaactgggatgccagagtatcgttttgtaact 5324  T
Q  265 ttctaaggagg 275  Q
    |||||||||||    
T  5323 ttctaaggagg 5313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 67 - 275
Target Start/End: Original strand, 6089711 - 6089919
Alignment:
Q  67 gagaattgtatgtatattatttcttctatgaattattttgctactcatgtatttagagaggggaatgcatgtgctgattctctagccagtctaggattaa 166  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  6089711 gagaattgtatgtatattatttcttctatgattttttttgctactcatgtatttagagaggggaatgcatgtgctgattctctagccagtctagggctaa 6089810  T
Q  167 ctcttgatcaccttaagatttggtttgatgctcgtggctgtatcaagtcttccttagctaggaacaaaactgggatgccagagtatcgttttgtaacttt 266  Q
    ||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6089811 ctcttgatcaccttaagatttggttggatgctcctgactatatcaagtcttccttagctaggaacaaaactgggatgccagagtatcgttttgtaacttt 6089910  T
Q  267 ctaaggagg 275  Q
    |||||||||    
T  6089911 ctaaggagg 6089919  T

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