View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_56 (Length: 364)
Name: NF1204_low_56
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 34179991 - 34179711
Alignment:
| Q |
16 |
atcaacaatcatcttcgcgactccgtttgaaaacaaatgagagttcgaatctagagtggatcataacnnnnnnnnctttcctccaccatgttgaaaaatg |
115 |
Q |
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| T |
34179991 |
atcaacaatcatcttcgcgactccgtttgagaacaaatgagagttagaatctagagtggatcataacaaaaaaa-ctttcctccaccatgttgaaaaatg |
34179893 |
T |
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| Q |
116 |
gtgggccatcaaaggacagtccctaagagaaaaagaagagaactgactatgatatctagcaataaacagctgtctccatagagtatggcctcttcagata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34179892 |
gtgggccatcaaaggacagtccctaagagaaaaagaagagaactaactatgatatctagcaataaacagctgtctccatagagtatggcctcttcagata |
34179793 |
T |
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| Q |
216 |
gccttccacctcctttttccaaccaaagtcatgttaaaaaggcttagatctctaacccgtatccatcatcgagtacaacttt |
297 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34179792 |
gccttctacctcctttttccaaccaaagtcatgtgaaaaaggcttagatctctaacccgtatccatcgtcgagtacaacttt |
34179711 |
T |
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