View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_57 (Length: 361)

Name: NF1204_low_57
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_57
NF1204_low_57
[»] chr2 (16 HSPs)
chr2 (7-332)||(10482805-10483122)
chr2 (59-332)||(10457272-10457544)
chr2 (102-332)||(10500948-10501175)
chr2 (118-332)||(10512307-10512520)
chr2 (75-265)||(10457546-10457733)
chr2 (173-332)||(10538546-10538703)
chr2 (209-329)||(10467349-10467469)
chr2 (159-307)||(10482555-10482703)
chr2 (144-329)||(7466743-7466926)
chr2 (117-283)||(10483075-10483237)
chr2 (250-332)||(10845341-10845425)
chr2 (5-47)||(10457328-10457370)
chr2 (185-274)||(9079098-9079187)
chr2 (9-54)||(10500994-10501039)
chr2 (6-51)||(10538596-10538641)
chr2 (5-49)||(10482852-10482896)
[»] chr1 (2 HSPs)
chr1 (77-328)||(24050873-24051114)
chr1 (5-51)||(24051020-24051066)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 10483122 - 10482805
Alignment:
Q  7 tccaacaatatatgctaggtgaaacaaatgttgatgtgacagtctgttcacattagatgaaacaagtgtgaagtctttctgcaagtcactacaaacaatg 106  Q
    |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| |||||    
T  10483122 tccaacaaaatatgctaggtgaaacaaatgttagtgtgacagtctgttcacattagatgaaacaaatgtgaagtccttctgcaagtctcttcaa-caatg 10483024  T
Q  107 aatgttcacattgccttgtaacatcttttattgggattccagtttttgcgtgtgaaaaaatcaacactctagttctgtatcccattaaaaaacacaatcc 206  Q
     ||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  10483023 gatgttcaaattgccttgtaacatcttttattaggactccagtttttgtgtgtgaaaaaaccaacactctagttctgtatcccatttaaaaacacaatcc 10482924  T
Q  207 agtctcatacaaatttatggacattcgtctccaataaaatctgctaggtgaaacaaatgttaatgtgacagtatgttttttcatgttctttatttaatca 306  Q
    |||||| ||||||||||||| ||||| |||| || ||||| |||||||||||||||||| | |||||||||||| ||||||||||       ||||||||    
T  10482923 agtctcgtacaaatttatgggcattcctctcgaacaaaatatgctaggtgaaacaaatgcttatgtgacagtatattttttcatg-------tttaatca 10482831  T
Q  307 ggtgatacttttactgatgggttagt 332  Q
    |||||||||||||| |||||||||||    
T  10482830 ggtgatacttttaccgatgggttagt 10482805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 59 - 332
Target Start/End: Complemental strand, 10457544 - 10457272
Alignment:
Q  59 ttagatgaaacaagtgtgaagtctttctgcaagtcactacaaacaatgaatgttcacattgccttgtaacatcttttattgggattccagtttttgcgtg 158  Q
    ||||||||||||| ||||||||||||||||||||||||  ||  ||||||  |||||||||||||||||||||||||||||||| ||||||||||| |||    
T  10457544 ttagatgaaacaattgtgaagtctttctgcaagtcactttaat-aatgaaccttcacattgccttgtaacatcttttattgggactccagtttttgtgtg 10457446  T
Q  159 tgaaaaaatcaacactctagttctgtatcccattaaaaaacacaatccagtctcatacaaatttatggacattcgtctccaataaaatctgctaggtgaa 258  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||| ||||| |||||||| ||    
T  10457445 tgaaaaaaccaacactctagttctgtatcccattaaaaaacacgatccagtctcataccaatttatgggcattcctctccaacaaaatatgctaggtaaa 10457346  T
Q  259 acaaatgttaatgtgacagtatgttttttcatgttctttatttaatcaggtgatacttttactgatgggttagt 332  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10457345 acaaatgttaatgtgacaatatgttttttcatgttcattatttaatcaggtgatacttttactgatgggttagt 10457272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 102 - 332
Target Start/End: Complemental strand, 10501175 - 10500948
Alignment:
Q  102 caatgaatgttcacattgccttgtaacatcttttattgggattccagtttttgcgtgtgaaaaaatcaacactctagttctgtatcccattaaaaaacac 201  Q
    ||||||||| |||||||| ||| ||||||| |||||||||| ||||||||||  ||||||||||| ||||| ||||||||| | ||||||| || |||||    
T  10501175 caatgaatgctcacattggcttttaacatcctttattgggactccagtttttttgtgtgaaaaaaccaacaatctagttctatctcccattcaacaacac 10501076  T
Q  202 aatccagtctcatacaaatttatggacattcgtctccaataaaatctgctaggtgaaacaaatgttaatgtgacagtatgttttttcatgttctttattt 301  Q
     || ||||||||||||||||||  | ||||| ||| ||| ||||| ||||||||||||||||| || ||||||| || |||||||||    |||| | ||    
T  10501075 tattcagtctcatacaaatttagtggcattcctcttcaacaaaatatgctaggtgaaacaaatctttatgtgacggtctgttttttc---gtcttcaatt 10500979  T
Q  302 aatcaggtgatacttttactgatgggttagt 332  Q
    ||||||||||||||||||||||||| |||||    
T  10500978 aatcaggtgatacttttactgatggcttagt 10500948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 118 - 332
Target Start/End: Complemental strand, 10512520 - 10512307
Alignment:
Q  118 tgccttgtaacatcttttattgggattccagtttttgcgtgtgaaaaaatcaacactctagttctgtatcccattaaaaaacacaatccagtctcataca 217  Q
    |||||||||||||| || ||||||| |||||||||||  |||||||||| ||| ||||||| ||| ||  |||||||| ||||||||||| ||||||||     
T  10512520 tgccttgtaacatccttgattgggactccagtttttgtatgtgaaaaaaccaatactctagctctataatccattaaacaacacaatccaatctcatacg 10512421  T
Q  218 aatttatggacattcgtctccaataaaatctgctaggtgaaacaaatgttaatgtgacagtatgttttttcatgttctttatttaatcaggtgatacttt 317  Q
    ||||||||| |||||  ||| || ||||| ||  | ||||||||||||||||| ||||| | ||||||||| ||||| ||||||||||||| ||||||||    
T  10512420 aatttatgggcattccactcgaacaaaatatgaca-gtgaaacaaatgttaatttgacaatctgttttttcgtgttcattatttaatcaggcgatacttt 10512322  T
Q  318 tactgatgggttagt 332  Q
    ||||||||| |||||    
T  10512321 tactgatggattagt 10512307  T

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Target: chr2; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 10457733 - 10457546
Alignment:
Q  75 tgaagtctttctgcaagtcactacaaacaatgaatgttcacattgccttgtaacatcttttattgggattccagtttttgcgtgtgaaaaaatcaacact 174  Q
    |||||||||||||| ||| ||| ||  ||||||||||||  ||||||||| |||||| |||||| ||| ||||||||||| ||||||||||| ||| |||    
T  10457733 tgaagtctttctgcgagtaacttcag-caatgaatgttctaattgccttggaacatcctttattcggactccagtttttgtgtgtgaaaaaagcaatact 10457635  T
Q  175 ctagttctgtatcccattaaaaaacacaatccagtctcatacaaatttatggacattcgtctccaataaaatctgctaggtgaaacaaatg 265  Q
    |||| |||  ||||||||||| |||||||||||||||||||| |||||||||  | || ||||||| ||||| ||||||||||||||||||    
T  10457634 ctaggtct--atcccattaaacaacacaatccagtctcatacgaatttatgggtaatcctctccaacaaaatatgctaggtgaaacaaatg 10457546  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 332
Target Start/End: Complemental strand, 10538703 - 10538546
Alignment:
Q  173 ctctagttctgtatcccattaaaaaacacaatccagtctcatacaaatttatggacattcgtctccaataaaatctgctaggtgaaacaaatgttaatgt 272  Q
    |||||||| | |||||||||| | ||||||||||| |||||||| |||||||||  ||||  |||||| |||||  |||||||| |||||||||||||||    
T  10538703 ctctagttttatatcccattacacaacacaatccaatctcatacgaatttatgggtattcccctccaacaaaataagctaggtgcaacaaatgttaatgt 10538604  T
Q  273 gacagtatgttttttcatgttctttatttaatcaggtgatacttttactgatgggttagt 332  Q
    |||||| | |||||   || || ||||||||| ||||||| |||||||||| ||||||||    
T  10538603 gacagtctattttt--gtgctcattatttaattaggtgattcttttactgaggggttagt 10538546  T

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Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 10467469 - 10467349
Alignment:
Q  209 tctcatacaaatttatggacattcgtctccaataaaatctgctaggtgaaacaaatgttaatgtgacagtatgttttttcatgttctttatttaatcagg 308  Q
    |||||||||||||||||| ||||| |||| ||||||||  | ||||||||||||||||||||| ||  |  | ||||||| ||||| ||||||||| |||    
T  10467469 tctcatacaaatttatgggcattcctctcaaataaaataggttaggtgaaacaaatgttaatgcgatggcctattttttcgtgttcattatttaattagg 10467370  T
Q  309 tgatacttttactgatgggtt 329  Q
    |||||||||||| ||||||||    
T  10467369 tgatacttttaccgatgggtt 10467349  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 307
Target Start/End: Complemental strand, 10482703 - 10482555
Alignment:
Q  159 tgaaaaaatcaacactctagttctgtatcccattaaaaaacacaatccagtctcatacaaatttatggacattcgtctccaataaaatctgctaggtgaa 258  Q
    |||||||| ||| ||||||||||| ||||| |||||| |||| |||||  |||| ||  || || ||  ||||| |||| || ||||| |||||||||||    
T  10482703 tgaaaaaagcaatactctagttctatatcctattaaacaacataatcctatctcttaggaaattttgagcattcctctcgaacaaaatatgctaggtgaa 10482604  T
Q  259 acaaatgttaatgtgacagtatgttttttcatgttctttatttaatcag 307  Q
     ||||| ||||||||||| | ||||||||||||||| ||||||||||||    
T  10482603 ccaaatattaatgtgacaatctgttttttcatgttcattatttaatcag 10482555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 329
Target Start/End: Original strand, 7466743 - 7466926
Alignment:
Q  144 tccagtttttgcgtgtgaaaaaatcaacactctagttctgtatcccattaaaaaacacaatccagtctcatacaaatttatggacattcgtctccaataa 243  Q
    |||||||||||  ||||| |||| ||| | | ||||| | |||| ||| ||| ||||||||||| |||| ||||||||||| | ||||| | || || ||    
T  7466743 tccagtttttg--tgtgacaaaaccaataatttagttttatatcacatcaaacaacacaatccaatctcctacaaatttattgtcattcctatcaaacaa 7466840  T
Q  244 aatctgctaggtgaaacaaatgttaatgtgacagtatgttttttcatgttctttatttaatcaggtgatacttttactgatgggtt 329  Q
    ||| ||||||||||||| ||| || | ||||| || |||||| || | ||| |||||||||||||||||||| |||| ||||||||    
T  7466841 aatatgctaggtgaaaccaatctttacgtgacggtctgttttatcgtcttcattatttaatcaggtgatactattaccgatgggtt 7466926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 283
Target Start/End: Complemental strand, 10483237 - 10483075
Alignment:
Q  117 ttgccttgtaacatcttttattgggattccagtttttgcgtgtgaaaaaatcaacactctagttct-----gtatcccattaaaaaacacaatccagtct 211  Q
    ||||||||||||||| |||||||| |||||||  |||| ||||||||||| ||| | | |||||||      |||||||||||| |||||||||||||||    
T  10483237 ttgccttgtaacatcctttattggaattccag--tttgtgtgtgaaaaaaccaatagtttagttctatataatatcccattaaacaacacaatccagtct 10483140  T
Q  212 catacaaatttatggacattcgtctccaataaaatctgctaggtgaaacaaatgttaatgtgacagtatgtt 283  Q
       || | ||||||| |||     ||||| ||||| ||||||||||||||||||||| ||||||||| ||||    
T  10483139 --gacgagtttatgggcat-----tccaacaaaatatgctaggtgaaacaaatgttagtgtgacagtctgtt 10483075  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 10845425 - 10845341
Alignment:
Q  250 ctaggtgaaacaaatgttaa-tgtgacagtatgtttttt-catgttctttatttaatcaggtgatacttttactgatgggttagt 332  Q
    ||||| |||||||||||||| || |||| | | |||||| | ||||| ||||||||||||| |||||||||||||||||||||||    
T  10845425 ctaggcgaaacaaatgttaaatgcgacaattttttttttacgtgttcattatttaatcaggagatacttttactgatgggttagt 10845341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 10457370 - 10457328
Alignment:
Q  5 tctccaacaatatatgctaggtgaaacaaatgttgatgtgaca 47  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||    
T  10457370 tctccaacaaaatatgctaggtaaaacaaatgttaatgtgaca 10457328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 9079098 - 9079187
Alignment:
Q  185 atcccattaaaaaacacaatccagtctcatacaaatttatggacattcgtctccaataaaatctgctaggtgaaacaaatgttaatgtga 274  Q
    |||||||||||  | |||||||| |||||||| || || ||| ||||| ||||||| ||||| || ||| | ||| ||||||||||||||    
T  9079098 atcccattaaactatacaatccaatctcatacgaaattgtgggcattcatctccaacaaaatatgatagcttaaataaatgttaatgtga 9079187  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 10501039 - 10500994
Alignment:
Q  9 caacaatatatgctaggtgaaacaaatgttgatgtgacagtctgtt 54  Q
    |||||| |||||||||||||||||||| || ||||||| |||||||    
T  10501039 caacaaaatatgctaggtgaaacaaatctttatgtgacggtctgtt 10500994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 10538641 - 10538596
Alignment:
Q  6 ctccaacaatatatgctaggtgaaacaaatgttgatgtgacagtct 51  Q
    ||||||||| ||| |||||||| |||||||||| ||||||||||||    
T  10538641 ctccaacaaaataagctaggtgcaacaaatgttaatgtgacagtct 10538596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 10482896 - 10482852
Alignment:
Q  5 tctccaacaatatatgctaggtgaaacaaatgttgatgtgacagt 49  Q
    |||| ||||| ||||||||||||||||||||| | ||||||||||    
T  10482896 tctcgaacaaaatatgctaggtgaaacaaatgcttatgtgacagt 10482852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 77 - 328
Target Start/End: Original strand, 24050873 - 24051114
Alignment:
Q  77 aagtctttctgcaagtcactacaaacaatgaatgttcacattgccttgtaacatcttttattgggattccagtttttgcgtgtgaaaaaatcaacactct 176  Q
    ||||||||||||| || ||| ||  ||||||||||| | |||| |||| ||||||  ||||||| | || |||||||| |||| ||||||  || |||||    
T  24050873 aagtctttctgcatgttacttcag-caatgaatgtttatattgtcttgcaacatccattattggtactctagtttttgtgtgttaaaaaacaaatactct 24050971  T
Q  177 agttctgtatcccattaaaaaacacaatccagtctcatacaaatttatggacattcgtctccaataaaatctgctaggtgaaacaaatgttaatgtgaca 276  Q
    |||||| |||| ||||||| ||||||||||| ||||||         ||| ||||| ||||||| ||||| ||||||||||||||| | |||||||||||    
T  24050972 agttctatatctcattaaacaacacaatccaatctcat---------tgggcattcctctccaacaaaatatgctaggtgaaacaattcttaatgtgaca 24051062  T
Q  277 gtatgttttttcatgttctttatttaatcaggtgatacttttactgatgggt 328  Q
    || | ||||||  ||||| ||||||||||||| |||||||||||||||||||    
T  24051063 gtctatttttttttgttcattatttaatcaggcgatacttttactgatgggt 24051114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 24051020 - 24051066
Alignment:
Q  5 tctccaacaatatatgctaggtgaaacaaatgttgatgtgacagtct 51  Q
    |||||||||| |||||||||||||||||| | || ||||||||||||    
T  24051020 tctccaacaaaatatgctaggtgaaacaattcttaatgtgacagtct 24051066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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