View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_6 (Length: 699)
Name: NF1204_low_6
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 172 - 485
Target Start/End: Original strand, 10254216 - 10254527
Alignment:
| Q |
172 |
atgaaagttagatacttatatttcagattcaaaactctaatgtgttgtttgtgtcctaaaataattcataatatcttcannnnnnnaaataacttagatt |
271 |
Q |
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| T |
10254216 |
atgaaagttagatacttatatttcagattcaaaactctaatgtgttgtttgtgtcctaaaataattcataatatcttcatttttttaaataacttaaatt |
10254315 |
T |
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| Q |
272 |
tcattttcaacctaataacaatcacatatttgannnnnnnn----cccatccaacacaagataagtatcgtacctctcccacctcacacaaatcacaatt |
367 |
Q |
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| T |
10254316 |
tcattttcaacctattaacaatcacatatttgattttttttttttcccatccaacacaagataagtatcgtacctc--ccacctcacacaaatcacaatt |
10254413 |
T |
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| Q |
368 |
tccccaatctttctttcactacaacccccaaacattatttcctccaacataaccatggtccctaaacccatcataataacaagtaaacaaccaccaacaa |
467 |
Q |
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| T |
10254414 |
tctccaatctt----tcactacaacccccaaacattatttcctccaacataaccatggtccctaaacccatcataataacaagtaaacaaccaccaacaa |
10254509 |
T |
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| Q |
468 |
cttcttctatccctccat |
485 |
Q |
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| T |
10254510 |
cttcttctatccctccat |
10254527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 6 - 161
Target Start/End: Original strand, 10254017 - 10254172
Alignment:
| Q |
6 |
ctccaacaatatgaccgcaggaatatttgtatgcattcaatccaacgcaattttctcaaagtgtcagcatcaaaacaataaggaatctatttttggatta |
105 |
Q |
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| T |
10254017 |
ctccaaccatatgaccgcaggaatatttgtatgcattcaatccaacgcaattttctcaaagtgtcagcatcaaaacaataaggaatctatttttggatta |
10254116 |
T |
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| Q |
106 |
atatggaactcaaattcctttctattatctctctcactctcttgcttatatttatt |
161 |
Q |
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| T |
10254117 |
atatggaactcaaattcctttctattatctctttcactctcttgcttatatttatt |
10254172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 614 - 670
Target Start/End: Original strand, 10254659 - 10254715
Alignment:
| Q |
614 |
aaaaaacgacaaacatcgtcactcccagcactactattcaacacatttgacgacatc |
670 |
Q |
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| T |
10254659 |
aaaaaaccacaaacatcgtcactcccagcactactattcaacacattcgacgacatc |
10254715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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