View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_63 (Length: 344)
Name: NF1204_low_63
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 1750968 - 1750668
Alignment:
| Q |
11 |
cagagaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtactcattagtccatcc |
110 |
Q |
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| T |
1750968 |
cagagaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtactcattagtccatcc |
1750869 |
T |
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| Q |
111 |
tcaagctaatcaatttggaattttttaatctagttatgtactcggaataagtacacaacttctaaaagtttgttatttaagtatgaataattttgccaat |
210 |
Q |
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| T |
1750868 |
tcaagctaat-aatttggaattttttaatctagttatgtactcggaataagtacacaacttctaaaagtttgttatttaagtatgaataattttgccaat |
1750770 |
T |
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| Q |
211 |
tttaacagtgaaaacttgttatgtaagttactaaaaattacctagtagaagtatgaatcctctgaccatattatttatgaaggctcaatcagagacatta |
310 |
Q |
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| T |
1750769 |
tttaatagtgaaaacttgttatgtaagttactaaaaattacc---tagaagtatgaatcctctgaccatattatttatgaaggctcaatcagagacatta |
1750673 |
T |
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| Q |
311 |
gtgac |
315 |
Q |
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||||| |
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| T |
1750672 |
gtgac |
1750668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 1742299 - 1742193
Alignment:
| Q |
14 |
agaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtactcattagtccatcctca |
113 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
1742299 |
agaaacatttcagattataaggaataatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtacttattattacatcctca |
1742200 |
T |
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| Q |
114 |
agctaat |
120 |
Q |
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||||||| |
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| T |
1742199 |
agctaat |
1742193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 1756301 - 1756215
Alignment:
| Q |
14 |
agaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtactcat |
100 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
1756301 |
agaaacatttcagattataaggaacagtggtgatcccctcaaaattcgaatcaaagcatcaaatggtctatattggcaggtactcat |
1756215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 1719716 - 1719634
Alignment:
| Q |
15 |
gaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtact |
97 |
Q |
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||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
1719716 |
gaaacatttcagattataaggaataaaaatgaacctctcaaaattcgaatcaaagcatcaaatggtctattttggcgggtact |
1719634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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