View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_66 (Length: 337)
Name: NF1204_low_66
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 26711146 - 26711443
Alignment:
| Q |
8 |
cgaataatattaaaaaactagttccaccaaaacatgtgaaatgagtttcatcaaaagcattagaaacagtacttggacatcgattctctaaaagctctgt |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26711146 |
cgaataatattaaaaaactagtcccaccaaaacatgtgaaatgagtttcatcaaaagcattagagacagtacttggacatcgattctctaaaagctctgt |
26711245 |
T |
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| Q |
108 |
gtatcgatttgccgcacacttttcaggtgaagcatattcctcagtgcaacaatgctttggctctctagtggtataacatggactcttgcaagcaattttt |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26711246 |
gtatcgatttggcgcacacttttcaggtgaagcatattcctcagtgcaacaatgctttggctctctagtggtataacatggactcttgcaagcaatcttt |
26711345 |
T |
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| Q |
208 |
ctcccttcatcgctatacacacccaaccaatcaggacatcgatccaacaaattcatatcgcacataattttctggcatttggattctaaaggtgttaa |
305 |
Q |
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||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
26711346 |
ctcccttcatcgctatacacagccaaccaattaggacattgatccaacaaattcatatcgcacatgattttcttgcatttggattctaaaggggttaa |
26711443 |
T |
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