View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_68 (Length: 320)

Name: NF1204_low_68
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_68
NF1204_low_68
[»] chr8 (3 HSPs)
chr8 (1-94)||(28974596-28974689)
chr8 (177-213)||(150926-150962)
chr8 (178-214)||(24190937-24190973)
[»] chr4 (3 HSPs)
chr4 (12-82)||(34849944-34850013)
chr4 (271-317)||(34860802-34860848)
chr4 (177-213)||(19487539-19487575)
[»] chr3 (2 HSPs)
chr3 (167-213)||(7546141-7546187)
chr3 (102-143)||(40517556-40517597)
[»] chr5 (1 HSPs)
chr5 (102-143)||(17636348-17636389)
[»] chr1 (2 HSPs)
chr1 (102-143)||(9862925-9862966)
chr1 (177-213)||(32713223-32713259)
[»] scaffold1763 (1 HSPs)
scaffold1763 (104-144)||(396-436)
[»] scaffold0037 (1 HSPs)
scaffold0037 (102-138)||(38336-38372)
[»] chr6 (1 HSPs)
chr6 (103-143)||(14028961-14029001)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 28974689 - 28974596
Alignment:
Q  1 ttacatagtgttcttaattctatgagttttccttctatcttttaattctcaaagggtttaagacaaggtaatcccttgtccccatacatcttag 94  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||  |||||||||||||||    
T  28974689 ttacatagtgttcttaattctatgagtttcccttccatcttttaattctcaaagtgtttatgacaaggtaatccctttcccccatacatcttag 28974596  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 150926 - 150962
Alignment:
Q  177 tagcgtgagttaacccacgcagcgtgagttaagtcac 213  Q
    |||||||||||||| |||||| |||||||||||||||    
T  150926 tagcgtgagttaactcacgcaacgtgagttaagtcac 150962  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 24190937 - 24190973
Alignment:
Q  178 agcgtgagttaacccacgcagcgtgagttaagtcaca 214  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  24190937 agcgtgagttaactcacgcagcgtgacttaagtcaca 24190973  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 34849944 - 34850013
Alignment:
Q  12 tcttaattctatgagttttccttctatcttttaattctcaaagggtttaagacaaggtaatcccttgtccc 82  Q
    |||||||||||||||||||||||| |||||||| ||||||||| | ||||||||| || ||||||| ||||    
T  34849944 tcttaattctatgagttttccttccatcttttatttctcaaagtg-ttaagacaaagtgatcccttttccc 34850013  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 34860802 - 34860848
Alignment:
Q  271 cggcagagagatttagttgaaagtgaattgcttttgtctgtggtgct 317  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||    
T  34860802 cggcagagagatttagttgaaagtgaatggcttttgtttggggtgct 34860848  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 19487575 - 19487539
Alignment:
Q  177 tagcgtgagttaacccacgcagcgtgagttaagtcac 213  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  19487575 tagcatgagttaactcacgcagcgtgagttaagtcac 19487539  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 7546187 - 7546141
Alignment:
Q  167 ttaactcacgtagcgtgagttaacccacgcagcgtgagttaagtcac 213  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  7546187 ttaactcacgtagcgtgacttaactcacacagcgtgagttaagtcac 7546141  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 40517597 - 40517556
Alignment:
Q  102 tctgctctttacctaaacggtttcgctcattcccaaaataaa 143  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||    
T  40517597 tctgctctttacccaaacggtttcgctcattcctaaagtaaa 40517556  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 17636348 - 17636389
Alignment:
Q  102 tctgctctttacctaaacggtttcgctcattcccaaaataaa 143  Q
    ||||||| ||||||||| || |||||||||||||||||||||    
T  17636348 tctgctcattacctaaatggattcgctcattcccaaaataaa 17636389  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 9862966 - 9862925
Alignment:
Q  102 tctgctctttacctaaacggtttcgctcattcccaaaataaa 143  Q
    ||||||||||||| ||| | ||||||||||||||||||||||    
T  9862966 tctgctctttacccaaatgatttcgctcattcccaaaataaa 9862925  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 32713259 - 32713223
Alignment:
Q  177 tagcgtgagttaacccacgcagcgtgagttaagtcac 213  Q
    |||||||||||||| |||||||||||| |||||||||    
T  32713259 tagcgtgagttaactcacgcagcgtgacttaagtcac 32713223  T

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Target: scaffold1763 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 436 - 396
Alignment:
Q  104 tgctctttacctaaacggtttcgctcattcccaaaataaaa 144  Q
    ||||||||||| ||| ||||||||||||||||||| |||||    
T  436 tgctctttacccaaatggtttcgctcattcccaaagtaaaa 396  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 38372 - 38336
Alignment:
Q  102 tctgctctttacctaaacggtttcgctcattcccaaa 138  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  38372 tctgctctttacccaaactgtttcgctcattcccaaa 38336  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 14029001 - 14028961
Alignment:
Q  103 ctgctctttacctaaacggtttcgctcattcccaaaataaa 143  Q
    ||||||||||| |||| ||||||||||||||| ||||||||    
T  14029001 ctgctctttacttaaatggtttcgctcattcctaaaataaa 14028961  T

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