View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_71 (Length: 314)
Name: NF1204_low_71
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 294
Target Start/End: Complemental strand, 9788627 - 9788366
Alignment:
| Q |
30 |
tttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9788627 |
tttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagccttt |
9788528 |
T |
|
| Q |
130 |
gtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccacttttttctgcaatttaattttctt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788527 |
gtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccacttttttctgcaatttaattttctt |
9788428 |
T |
|
| Q |
230 |
tgcctttattnnnnnnnnnnnnntgcttgcttacatatttatgattcataaatatacacaagttt |
294 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788427 |
tgcctttatt---aaaaaaaaaatgcttgcttacatatttatgattcataaatatacacaagttt |
9788366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 58 - 294
Target Start/End: Original strand, 3589193 - 3589429
Alignment:
| Q |
58 |
agtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctctgtttgggttcttttagcctctctttttg |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3589193 |
agtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctttgtttgggttcttttagcctctctttttg |
3589292 |
T |
|
| Q |
158 |
tttcattgggttaaggctttgagtccccccaattgttctttgtaccacttttttctgcaatttaattttctttgcctttatt-nnnnnnnnnnnnntgct |
256 |
Q |
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| ||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || | |
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| T |
3589293 |
tctcattgggttaaggc-ttgagtccccccaattgttctctgcaccacttttttctgcaatttaattttctctgcctttattaaaaaaaaaaaatatgtt |
3589391 |
T |
|
| Q |
257 |
tgcttacatatttatgattcataaatatacacaagttt |
294 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
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| T |
3589392 |
tgcttacatatttacgattcataaatatacacaagttt |
3589429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 10013494 - 10013286
Alignment:
| Q |
30 |
tttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10013494 |
tttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaatggattcagttagcttgcaggactgtcattgtgtttgttttggcttagccttt |
10013395 |
T |
|
| Q |
130 |
gtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccacttttttctgcaatttaattttctt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
10013394 |
gtttgggttcttttagcctctctttttgtctcattgggttaaggc-ttgagtccccccaattgttctatgtaccacttttttttgcaatttaattttctc |
10013296 |
T |
|
| Q |
230 |
tgcctttatt |
239 |
Q |
| |
|
|||||||||| |
|
|
| T |
10013295 |
tgcctttatt |
10013286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 10020635 - 10020427
Alignment:
| Q |
30 |
tttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10020635 |
tttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaatggattcagttagcttgcaggactgtcattgtgtttgttttggcttagccttt |
10020536 |
T |
|
| Q |
130 |
gtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccacttttttctgcaatttaattttctt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
10020535 |
gtttgggttcttttagcctctctttttgtctcattgggttaaggc-ttgagtccccccaattgttctatgtaccacttttttttgcaatttaattttctc |
10020437 |
T |
|
| Q |
230 |
tgcctttatt |
239 |
Q |
| |
|
|||||||||| |
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|
| T |
10020436 |
tgcctttatt |
10020427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 10013266 - 10013231
Alignment:
| Q |
259 |
cttacatatttatgattcataaatatacacaagttt |
294 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
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|
| T |
10013266 |
cttacatatttacgattcataaatatacacaagttt |
10013231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 10020407 - 10020372
Alignment:
| Q |
259 |
cttacatatttatgattcataaatatacacaagttt |
294 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
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|
| T |
10020407 |
cttacatatttacgattcataaatatacacaagttt |
10020372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 294
Target Start/End: Original strand, 44505573 - 44505837
Alignment:
| Q |
30 |
tttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |
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|
| T |
44505573 |
tttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcagaactaccattgtgtttgttttggcttagccttt |
44505672 |
T |
|
| Q |
130 |
gtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccac----ttttttctgcaatttaattt |
225 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| | |||||| |||||||||||||||||||| |
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| T |
44505673 |
gtttgggttcttttagccgctctttttgtttcattggcttaaggctttgagtccccccaactgttctatttaccacttttttttttctgcaatttaattt |
44505772 |
T |
|
| Q |
226 |
tctttgcctttattnnnnnnnnnnnnntgcttgcttacatatttatgattcataaatatacacaagttt |
294 |
Q |
| |
|
||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44505773 |
tctctgcctttatt----aaaaaaaaatgtttgcttacatatttatgattcataaatatacacaagttt |
44505837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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