View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_72 (Length: 314)
Name: NF1204_low_72
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 304
Target Start/End: Complemental strand, 40454774 - 40454500
Alignment:
| Q |
30 |
ataacggttccataataagtgttacatcattcttatacttaatcaaggtcaatacaagtattaagatataacttgtataaagcgacttctattcgggtga |
129 |
Q |
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| T |
40454774 |
ataacggttccataataagtgttacaccattcttatacttaatcaaggtcaatacaagtattaagatataacttgtataaagcgacttctattcgggtga |
40454675 |
T |
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| Q |
130 |
aacagtcggattttaaatctctgtttttaccacatttgtcccatccaaaactattttaatgtccaaccgtaactcacagcaaagttaaagttatccttcg |
229 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
40454674 |
aacagtcagattttaaatctctgtttttaccacatttgtcccttccaaaactattttaatgtctaaccgtaactcacaacaaagttaaagttatccttcg |
40454575 |
T |
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| Q |
230 |
taggtttctatatttctttctctgttttcgtcttgtatgtttcttgagcttagcatcaaccttggtgtcttcatc |
304 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40454574 |
taggtttctatatttctttctctgttttcgtcttttatgtttcttgagcttagcatcaaccttggtgtcttcatc |
40454500 |
T |
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