View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_73 (Length: 313)

Name: NF1204_low_73
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_73
NF1204_low_73
[»] chr1 (1 HSPs)
chr1 (30-313)||(48276904-48277197)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 30 - 313
Target Start/End: Original strand, 48276904 - 48277197
Alignment:
Q  30 cttatgtttatgctaattctcaaactcaaaggaaccaactccttacactattcttatgatcgatctcatgccnnnnnnngtttatttattcttaattttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  48276904 cttatgtttatgctaattctcaaactcaaaggaaccaactccttacactattcttatgatcgatctcatgccttttttc-tttatttattcttaattttg 48277002  T
Q  130 aaattaatat---------------attcaaaattgctctgttcagagtattatggtaaataattgtcaccaccaagtatttttctataatccatcctct 214  Q
    ||||||||||               ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48277003 aaattaatatcccataactttatatattgaaaattgctctgttcagagtattatggtaaataattgtcaccaccaagtatttttctataatccatcctct 48277102  T
Q  215 nnnnnnnctatttttctgcaataaccagtgaatttggttttggtagctataatatatatattttgtcgttgatattcctctaaaatcactagttttagt 313  Q
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  48277103 aaaaaaactatttttctgcaataaccagtgaatttggttttggtagctata----atatattttgtcgttgatattcctctaaaatcactagttttagt 48277197  T

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