View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_75 (Length: 312)
Name: NF1204_low_75
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_75 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 53060176 - 53059865
Alignment:
| Q |
10 |
ataattcttaaacaagtaagttttgagctgagatgaaaggcattctggaacaatctttgggtcctcccaaatgtcctcatcatcat---------ttcca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53060176 |
ataattcttaaacaagtaagttttgagctgagatgaaaggcattctggaacaatctttgggtcctcccaaatgtcctcatcatcatcgtcatcatttcca |
53060077 |
T |
|
| Q |
101 |
ttctctatcccattttctatctcctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagataggtagaggtagagttaaacaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53060076 |
ttctctatcccattttctatctcctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagataggtagaggtagagttaaacaaaata |
53059977 |
T |
|
| Q |
201 |
aataacatatcaggaaatcaatcaaattatatgtgaaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccacatc |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53059976 |
aataacatatcaggaaatcaatcagattatatgtgaaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccacatc |
53059877 |
T |
|
| Q |
301 |
ggcttcttaggc |
312 |
Q |
| |
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|||||||||| |
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|
| T |
53059876 |
cacttcttaggc |
53059865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 53072197 - 53071908
Alignment:
| Q |
10 |
ataattcttaaacaagtaagttttgagctgagatgaaaggcattctggaacaatctttgggtcctcccaaatgtcctcatcatcatt---------tcca |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||| |||| |
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| T |
53072197 |
ataattcttaaacaagcaagttttgagctgagatgaaagacattcttgaacaatctttgggccctcccaaacgtcctcatcatcattgtcatcatttcca |
53072098 |
T |
|
| Q |
101 |
ttctctatcccattttctatctcctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagataggtagaggtagagttaaacaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||| |
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| T |
53072097 |
ttctctatcccattttctatctcctattaacaataagtaaatttccac-aaaaacagaaa-caaaagttaagatcggtagaggtaatgttaaacaaaata |
53072000 |
T |
|
| Q |
201 |
aataacatatcaggaaatcaatcaaattatatgtgaaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagca |
292 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
53071999 |
aataaaatatcaggaaatcaatcaaattatatgtgaaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca |
53071908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 37419460 - 37419170
Alignment:
| Q |
11 |
taattcttaaacaagtaagttttgagctgagatgaaaggcattctggaacaatctttgggtcctcccaaatgtcctcatcatcatttccattctctatcc |
110 |
Q |
| |
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||||| ||||||| | |||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| ||||||| |
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| T |
37419460 |
taatttttaaacaggcaagttttgagcttagatgaaaggcattccggaacaatttttgggtcctcccaaatgtcgtcatcatcatcg------tctatcc |
37419367 |
T |
|
| Q |
111 |
cattttctatctcctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagataggtagaggtagagttaaacaaaataaataacatat |
210 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||||||| |||||| |||||| |||||||||| | ||||| |||||||||||||||||||| | |
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| T |
37419366 |
tattttcaatctcctgtaaacaataagtaaatttccacccaaaacaagaaacaagagttaagatatgcagaggaagagttaaacaaaataaata-----t |
37419272 |
T |
|
| Q |
211 |
caggaaatcaatcaaattatatgtgaaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccacatcggcttcttag |
310 |
Q |
| |
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||||||| || |||||||||| |||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||| || |||||||| |
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| T |
37419271 |
gaggaaatggatgaaattatatgcgaaacctcgtaaatgataagatgttgaagctttggactgttttgaagcatttctagcatccacgtccacttcttag |
37419172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 53063156 - 53062964
Alignment:
| Q |
10 |
ataattcttaaacaagtaagttttgagctgagatgaaaggcattctggaacaatctttgggtcctcccaaatgtcctca---tcatcatttccattctct |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53063156 |
ataattcttaaacaagcaagttttgagctgagatgaaaggcattccggaatgatctttgggtcctcccaaatgtcctcatcgtcatcatttccattctct |
53063057 |
T |
|
| Q |
107 |
atcccattttctatctcctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagataggtagag--gtagagttaaacaaa |
197 |
Q |
| |
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|||| |||||| ||||||| | || |||||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||| |||| |
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| T |
53063056 |
atcctattttcaatctcctgtaaataataagtaaatttccacccaaaacaagaaacaaaagttaagatatgtagaggagtagagttaatcaaa |
53062964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 53062970 - 53062880
Alignment:
| Q |
220 |
aatcaaattatatgtgaaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccacatcggcttcttag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || |||||||| |
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| T |
53062970 |
aatcaaattatatgtgaaacctcatgaatgataagatgttaaagctttggactgtgctgaagcatttctagcatccacgtccacttcttag |
53062880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 50815383 - 50815342
Alignment:
| Q |
38 |
tgagatgaaaggcattctggaacaatctttgggtcctcccaa |
79 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||||| |
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| T |
50815383 |
tgagataaaaggcattctggaacaattgttgggtcctcccaa |
50815342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 50860481 - 50860522
Alignment:
| Q |
38 |
tgagatgaaaggcattctggaacaatctttgggtcctcccaa |
79 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
50860481 |
tgagataaaaggcattctggaacaattgttgggtcctcccaa |
50860522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 6688387 - 6688096
Alignment:
| Q |
10 |
ataattcttaaacaagtaagttttgagctgagatgaaaggcattctggaacaatctttgggtcctcccaaatgtcctcat--catcatttccattctcta |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| |
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|
| T |
6688387 |
ataattcttaaacaagcaagttttgagctgagatgaaaggcattctggaacaatctttggttcctcccaatagtcctcatatcatcatttccattctcta |
6688288 |
T |
|
| Q |
108 |
tcccattttctatctcctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaag----ataggtagaggtagagttaaacaaaataaat |
203 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||||||||||||||||| | |
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|
| T |
6688287 |
tcccattttctatctcctgtaaacaataagtaaatttccacccaaaacacaaaacaagagttaagatatataggtaaaggtagagttaaacaaaataact |
6688188 |
T |
|
| Q |
204 |
aacatatcaggaaatcaatcaaattatatgtgaaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccac |
297 |
Q |
| |
|
| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||||||| |
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|
| T |
6688187 |
a--atatcatgaaatcaatcaaagtatatgtgaaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccac |
6688096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 297
Target Start/End: Complemental strand, 34036545 - 34036297
Alignment:
| Q |
30 |
ttttgagctgagatgaaaggcattctggaacaatctttgggtcctcccaaatgtcctcatcatcatttccattctctatcccattttctatctcctatta |
129 |
Q |
| |
|
|||||| |||||||||||||||||| ||| |||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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|
| T |
34036545 |
ttttgaactgagatgaaaggcattccggagcaatatttgggtccttccaattgtcctcatcagcatttccattctctatcccattttctatctcctgtta |
34036446 |
T |
|
| Q |
130 |
acaataagtaaatttccaccaaaaacagaaaacaaaagttaagataggtagaggtagagttaaacaaaataaataacatatcaggaaatcaatcaaatta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34036445 |
acaataagtaaatttccaccaaaaacagaaaacaaaagttaagataggtagaggtagagttaaacaaaataaata-------------------aaatta |
34036365 |
T |
|
| Q |
230 |
tatgtgaaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccac |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
34036364 |
tatgtgaaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccac |
34036297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 31014736 - 31014476
Alignment:
| Q |
10 |
ataattcttaaacaagtaagttttgagctgagatgaaaggcattctggaacaatctttgggtcctcccaaatgtcctcatcatcatttccattctctatc |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||| || |||| ||| |
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|
| T |
31014736 |
ataattcttaaacaagcaagttttgagctgagatgaaaggcattccggaataatctttggatcctcccaattgtccttat------------tctcgatc |
31014649 |
T |
|
| Q |
110 |
ccattttctatctcctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaag--ataggtagaggtagagttaaacaaaataaataaca |
207 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
31014648 |
ccattttctatctcctgttaacaatatgtaaatttccaccaaaaacagaaaacaaaagttaagatataggtagaggtagagttaaacaaaataaataaaa |
31014549 |
T |
|
| Q |
208 |
tatcaggaaatcaatcaaattatatgtgaaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttcta |
289 |
Q |
| |
|
||| || |||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||| |
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| T |
31014548 |
catc---------atgaaattatatgtgaaaccttatgaatgataagatgttgaagcttgggactgtgttgaagcatttcta |
31014476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 16162488 - 16162549
Alignment:
| Q |
18 |
taaacaagtaagttttgagctgagatgaaaggcattctggaacaatctttgggtcctcccaa |
79 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | ||||||||||| |||||| |||||| |
|
|
| T |
16162488 |
taaacaagcaagttttgagctgagatgaaaggcaatgtggaacaatctgtgggtcttcccaa |
16162549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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