View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_8 (Length: 654)
Name: NF1204_low_8
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 87 - 639
Target Start/End: Original strand, 48757940 - 48758490
Alignment:
| Q |
87 |
ttataacacatacaaccgactaactgcatacgattaacaaagtttatcatttattatcatacgggggagcctgatggtggggttgatattactaacatta |
186 |
Q |
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| T |
48757940 |
ttataacacatacaaccaactaaatgtatacgattaacaaagtttatcatttattgtcatacggggaagcctgatggtggagttgatattactaacatta |
48758039 |
T |
|
| Q |
187 |
tttgaaatgtcactctttttgtttgaagattacttcctaattgaattcctaccaaagtcaacttgttttgaagatgtattattgttgtgatgttttgaac |
286 |
Q |
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| T |
48758040 |
tttgaaatgtcactctttttgtttgaagattacttcctaattgaattcctaccaaagtcaacttgttttgaagatgtattattgttgtaatgttttgaac |
48758139 |
T |
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| Q |
287 |
ttgagttcttttcataactcttttttgttgggtagaacattgttttttagtttatatattctgtccttttaacaaaaacaatctcttctactaa-nnnnn |
385 |
Q |
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| T |
48758140 |
ttgagttcttctcataactcttttttgttgggtagaacattgttttttagtttatatattctgtccttttaacaaaaacaatctcttctactaatttttt |
48758239 |
T |
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| Q |
386 |
nnnnggtggtgactccattaatatagtacactagacaattttacaaatgaaaattgaaagcgtaaaagagaaggttacgggtaagacaatatcaagtgtt |
485 |
Q |
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| T |
48758240 |
ttttggtggtgactcgattaatatagtacactagacaattttacaaatgaaaattgaaagcgtaaaagagaaggttacgggtaagacaatatcaagtgtt |
48758339 |
T |
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| Q |
486 |
attatcaagcctagcttaagcgatgcagcggggtccagttagaaataagacattgcattggaattgaaacttgctaccaaacggtccaaaaagtcatcgt |
585 |
Q |
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| T |
48758340 |
gttatcaagcctagcttaagcgatgcagcggggtccagttagaaataagacattgcattggaattgaaacttgctaccaaacggtccaaaaagtcatcgt |
48758439 |
T |
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| Q |
586 |
ctccttcacgcctttgcaaccttcaacaacactgttgcacttcaattcatctct |
639 |
Q |
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| T |
48758440 |
ctccttcacgcctttgcaacctt---caacactgttgcacttcaattcatctct |
48758490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 48757261 - 48757319
Alignment:
| Q |
25 |
agaacatcaacattgttctagcattggtgatgctctaacatcttttattttgcaagatg |
83 |
Q |
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| T |
48757261 |
agaacatcaacattattctagcattgatgatgctctaacatctattattttgcaagatg |
48757319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 29567657 - 29567691
Alignment:
| Q |
26 |
gaacatcaacattgttctagcattggtgatgctct |
60 |
Q |
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| T |
29567657 |
gaacatcaacattgttctagcattggagatgctct |
29567691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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