View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_84 (Length: 289)

Name: NF1204_low_84
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_84
NF1204_low_84
[»] chr2 (3 HSPs)
chr2 (105-260)||(36097823-36097983)
chr2 (103-186)||(36751704-36751791)
chr2 (142-196)||(37642588-37642641)
[»] chr4 (3 HSPs)
chr4 (103-162)||(20811790-20811849)
chr4 (139-217)||(24367071-24367150)
chr4 (201-229)||(20811854-20811882)
[»] chr3 (1 HSPs)
chr3 (130-222)||(39650939-39651030)
[»] chr1 (2 HSPs)
chr1 (130-231)||(43401506-43401607)
chr1 (130-199)||(28557314-28557383)
[»] chr7 (1 HSPs)
chr7 (139-195)||(3115748-3115804)
[»] chr5 (1 HSPs)
chr5 (130-201)||(10438452-10438521)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 36097983 - 36097823
Alignment:
Q  105 cataaggagaagttcatccacccatcaaagaaat----atccaacttcaaagtagtcataacactatttaagagaaaacacaaataatatgataactaac 200  Q
    ||||| |||||||||||||  |||||||| |||     ||||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||    
T  36097983 cataaagagaagttcatccttccatcaaacaaaggaccatccaacttcaaaatattcataacactatctaagagaaaacacaaataagatgataactaac 36097884  T
Q  201 ctctcttgaattgaatggcgcatcatagcttctatt-atcccttgatcagaacctttgcta 260  Q
    |||||||||| |||||| ||||| | | ||||||||  |||||| |||  |||||||||||    
T  36097883 ctctcttgaaatgaatgccgcatgacaacttctattcctccctttatcgaaacctttgcta 36097823  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 36751791 - 36751704
Alignment:
Q  103 gtcataaggagaagttcatccacccatcaaagaaat----atccaacttcaaagtagtcataacactatttaagagaaaacacaaata 186  Q
    ||||||| |||||||||||||  |||||||| |||     || |||||||||||||| |||| |||||||||| ||||||||||||||    
T  36751791 gtcataacgagaagttcatccttccatcaaacaaaggaagattcaacttcaaagtagccatatcactatttaaaagaaaacacaaata 36751704  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 37642641 - 37642588
Alignment:
Q  142 caacttcaaagtagtcataacactatttaagagaaaacacaaataatatgataac 196  Q
    ||||||||||||||||||||||||  ||| || ||||||||||||| ||||||||    
T  37642641 caacttcaaagtagtcataacacttcttacga-aaaacacaaataagatgataac 37642588  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 20811790 - 20811849
Alignment:
Q  103 gtcataaggagaagttcatccacccatcaaagaaatatccaacttcaaagtagtcataac 162  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20811790 gtcataaggagaagttcatccacccatcaaagaaatattcaacttcaaagtagtcataac 20811849  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 24367150 - 24367071
Alignment:
Q  139 atccaacttcaaagtagtcataacactatttaagagaaa-acacaaataatatgataactaacctctcttgaattgaatg 217  Q
    ||||||||| |||||||||||| |||| | |||||||||  ||||||||| ||||| | |||| ||||||||| ||||||    
T  24367150 atccaactttaaagtagtcataccactttctaagagaaacgcacaaataagatgatgattaacttctcttgaaatgaatg 24367071  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 20811854 - 20811882
Alignment:
Q  201 ctctcttgaattgaatggcgcatcatagc 229  Q
    |||||||||||||||||||||||||||||    
T  20811854 ctctcttgaattgaatggcgcatcatagc 20811882  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 39650939 - 39651030
Alignment:
Q  130 caaagaaatatccaacttcaaagtagtcataacactatttaagagaaaacacaaataatatgataactaacctctcttgaattgaatggcgca 222  Q
    ||||||||||||||||||||| ||||  ||||||| || |||||||||||  |||||| |||| || |||||||||||||| |||||||||||    
T  39650939 caaagaaatatccaacttcaaggtagctataacaccatctaagagaaaactaaaataagatgacaaataacctctcttgaa-tgaatggcgca 39651030  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 43401506 - 43401607
Alignment:
Q  130 caaagaaatatccaacttcaaagtagtcataacactatttaagagaaaacacaaataatatgataactaacctctcttgaattgaatggcgcatcatagc 229  Q
    ||||| ||| || ||||||||||||| |||| || ||| ||||| ||||||||||||| ||||||||||||||||  |||| |||||| ||||  |||||    
T  43401506 caaaggaatgtctaacttcaaagtagacataccattatctaagaaaaaacacaaataagatgataactaacctcttctgaaatgaatgacgcaatatagc 43401605  T
Q  230 tt 231  Q
    ||    
T  43401606 tt 43401607  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 28557383 - 28557314
Alignment:
Q  130 caaagaaatatccaacttcaaagtagtcataacactatttaagagaaaacacaaataatatgataactaa 199  Q
    ||||| || ||||||||| ||||||||||||| ||||| ||||| |||  |||||| | |||||||||||    
T  28557383 caaaggaacatccaactttaaagtagtcataagactatctaagaaaaataacaaattagatgataactaa 28557314  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 3115804 - 3115748
Alignment:
Q  139 atccaacttcaaagtagtcataacactatttaagagaaaacacaaataatatgataa 195  Q
    ||||||||||||| |||||||||||| ||  |||||||||||||||||| |||||||    
T  3115804 atccaacttcaaaatagtcataacacaatcaaagagaaaacacaaataagatgataa 3115748  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 10438452 - 10438521
Alignment:
Q  130 caaagaaatatccaacttcaaagtagtcataacactatttaagagaaaacacaaataatatgataactaacc 201  Q
    ||||| |||||||||||||||||||| ||||||| ||| ||  | |||||||||||||  ||||||||||||    
T  10438452 caaaggaatatccaacttcaaagtagccataacattatcta--aaaaaacacaaataagttgataactaacc 10438521  T

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