View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_89 (Length: 277)

Name: NF1204_low_89
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_89
NF1204_low_89
[»] chr6 (2 HSPs)
chr6 (1-267)||(11725644-11725910)
chr6 (36-105)||(11718950-11719019)
[»] chr2 (5 HSPs)
chr2 (114-215)||(12313128-12313229)
chr2 (178-220)||(15977994-15978036)
chr2 (178-220)||(19629372-19629414)
chr2 (178-220)||(19826273-19826315)
chr2 (178-220)||(33941918-33941960)
[»] chr8 (2 HSPs)
chr8 (132-220)||(27754413-27754501)
chr8 (178-220)||(28769358-28769400)
[»] chr4 (1 HSPs)
chr4 (184-227)||(30338616-30338659)
[»] chr7 (1 HSPs)
chr7 (178-220)||(25596042-25596084)
[»] chr3 (3 HSPs)
chr3 (178-220)||(26542546-26542588)
chr3 (178-220)||(45535237-45535279)
chr3 (178-215)||(23808083-23808120)
[»] chr1 (1 HSPs)
chr1 (132-221)||(10199381-10199470)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 11725910 - 11725644
Alignment:
Q  1 catgagaaagattcaaagcaaagtgttaaagaaatatttacaagttataagagataatattctcaatctagtacaagaaatgacaaataccatgttacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11725910 catgagaaagattcaaagcaaagtgttaaagaaatatttacaagttataagagatgatattctcaatctagtacaagaaatgacaaataccatgttacac 11725811  T
Q  101 aaaccactaatattaagctcttgtgagagagtttgggagaacttattcaaacagtttatgatatgttcatnnnnnnntttcaacttattttcataaactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  11725810 aaaccactaatattaagctcttgtgagagagtttgggagaacttattcaaacagtttatgatatgttcataaaaaaatttcaacttattttcataaactc 11725711  T
Q  201 tccaaaatagcttatcaaaaacagttttagccaatccaaaacaatttaaccttattttgagtctgtg 267  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11725710 tccaaaataacttatcaaaaacagttttagccaatacaaaacaatttaaccttattttgagtctgtg 11725644  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 11719019 - 11718950
Alignment:
Q  36 atttacaagttataagagataatattctcaatctagtacaagaaatgacaaataccatgttacacaaacc 105  Q
    |||||||||||| || | ||||||||||||||||||  ||||||||| |||||  |||| || |||||||    
T  11719019 atttacaagttagaaaatataatattctcaatctagagcaagaaatggcaaatgtcatgctatacaaacc 11718950  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 12313128 - 12313229
Alignment:
Q  114 taagctcttgtgagagagtttgggagaacttattcaaacagtttatgatatgttcatnnnnnnntttcaacttattttcataaactctccaaaatagctt 213  Q
    ||||| |||||||||  ||||||||||| ||||  |||||| |||||  ||||||||       ||||| ||||||||||||| |||||||| |||||||    
T  12313128 taagcacttgtgagattgtttgggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaagatagctt 12313227  T
Q  214 at 215  Q
    ||    
T  12313228 at 12313229  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 15978036 - 15977994
Alignment:
Q  178 tttcaacttattttcataaactctccaaaatagcttatcaaaa 220  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||    
T  15978036 tttcagcttattttcataatctctccaaaatagcttatgaaaa 15977994  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 19629414 - 19629372
Alignment:
Q  178 tttcaacttattttcataaactctccaaaatagcttatcaaaa 220  Q
    |||||||||||||||||||||||||||  ||||||||| ||||    
T  19629414 tttcaacttattttcataaactctccagtatagcttatgaaaa 19629372  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 19826315 - 19826273
Alignment:
Q  178 tttcaacttattttcataaactctccaaaatagcttatcaaaa 220  Q
    |||||||||||||||||||||||||||  ||||||||| ||||    
T  19826315 tttcaacttattttcataaactctccagtatagcttatgaaaa 19826273  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 33941960 - 33941918
Alignment:
Q  178 tttcaacttattttcataaactctccaaaatagcttatcaaaa 220  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||    
T  33941960 tttcaacttattatcataaactctccaagatagcttatgaaaa 33941918  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 27754501 - 27754413
Alignment:
Q  132 tttgggagaacttattcaaacagtttatgatatgttcatnnnnnnntttcaacttattttcataaactctccaaaatagcttatcaaaa 220  Q
    |||||||||||||||  ||||||||||||| ||| | ||        |||| ||||||||||||| |||||||||||||||||| ||||    
T  27754501 tttgggagaacttatgaaaacagtttatgacatgattataagttgcgttcagcttattttcataagctctccaaaatagcttatgaaaa 27754413  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 28769358 - 28769400
Alignment:
Q  178 tttcaacttattttcataaactctccaaaatagcttatcaaaa 220  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  28769358 tttcagcttatttccataaactctccaaaatagcttatgaaaa 28769400  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 30338616 - 30338659
Alignment:
Q  184 cttattttcataaactctccaaaatagcttatcaaaaacagttt 227  Q
    |||||||||||||||||||||| | ||||||| |||||||||||    
T  30338616 cttattttcataaactctccaagagagcttatgaaaaacagttt 30338659  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 25596084 - 25596042
Alignment:
Q  178 tttcaacttattttcataaactctccaaaatagcttatcaaaa 220  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||    
T  25596084 tttcaacttattttcataagctctccaagatagcttatgaaaa 25596042  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 26542588 - 26542546
Alignment:
Q  178 tttcaacttattttcataaactctccaaaatagcttatcaaaa 220  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||    
T  26542588 tttcaacttatttccataaactctccataatagcttatgaaaa 26542546  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 45535237 - 45535279
Alignment:
Q  178 tttcaacttattttcataaactctccaaaatagcttatcaaaa 220  Q
    |||||||||||||||||||||||||||  ||||||||| ||||    
T  45535237 tttcaacttattttcataaactctccagtatagcttatgaaaa 45535279  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 23808083 - 23808120
Alignment:
Q  178 tttcaacttattttcataaactctccaaaatagcttat 215  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  23808083 tttcatcttattttcataaactctccaagatagcttat 23808120  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 10199381 - 10199470
Alignment:
Q  132 tttgggagaacttattcaaacagtttatgatatgttcatnnnnnnntttcaacttattttcataaactctccaaaatagcttatcaaaaa 221  Q
    |||||||||||| ||  ||| || |||||| ||||||||       ||||| ||||||||||||| ||||| |||||||||||| |||||    
T  10199381 tttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaa 10199470  T

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