View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_97 (Length: 262)

Name: NF1204_low_97
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_97
NF1204_low_97
[»] chr2 (2 HSPs)
chr2 (21-233)||(44648547-44648759)
chr2 (42-89)||(15403641-15403688)
[»] chr4 (3 HSPs)
chr4 (24-127)||(2428646-2428749)
chr4 (24-127)||(47101320-47101423)
chr4 (42-99)||(1726258-1726315)
[»] chr3 (2 HSPs)
chr3 (42-94)||(43490078-43490130)
chr3 (36-108)||(49532575-49532647)
[»] chr8 (1 HSPs)
chr8 (42-94)||(38653154-38653206)
[»] chr7 (2 HSPs)
chr7 (48-94)||(33274270-33274316)
chr7 (42-94)||(3160291-3160343)
[»] chr6 (2 HSPs)
chr6 (48-94)||(10030004-10030050)
chr6 (42-91)||(4038759-4038808)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 44648759 - 44648547
Alignment:
Q  21 atgaataggaaaaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44648759 atgaataggaaaaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatg 44648660  T
Q  121 caaaaactaactttccaattaatgtggaaaatcaaaccaattctatttcatcttcttcaacttcttccaaagcattttctgcagttcttagtgcgaagtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44648659 caaaaactaactttccaattaatgtggaaaatcaaaccaattctatttcatcttcttcaacttcttccaaagcattttctgcagttcttagtgcaaagtt 44648560  T
Q  221 aaggaagtgttgc 233  Q
    |||||||||||||    
T  44648559 aaggaagtgttgc 44648547  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 15403641 - 15403688
Alignment:
Q  42 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgat 89  Q
    |||||||| |||||||| ||||||||||||||||||| ||| ||||||    
T  15403641 tggttaggtacatttgacacagctgaagaagcagctagagcttatgat 15403688  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 2428749 - 2428646
Alignment:
Q  24 aataggaaaaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaa 123  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||    
T  2428749 aataggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccattctaatgagtggaagaaatgcaa 2428650  T
Q  124 aaac 127  Q
    ||||    
T  2428649 aaac 2428646  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 47101423 - 47101320
Alignment:
Q  24 aataggaaaaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaa 123  Q
    |||||||| || ||||||||| ||||||||||||||||||| ||||||||||| | |||||||||| |||| || ||||| |||||||| |||||||| |    
T  47101423 aataggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgcca 47101324  T
Q  124 aaac 127  Q
    ||||    
T  47101323 aaac 47101320  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 1726258 - 1726315
Alignment:
Q  42 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaa 99  Q
    ||||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||||    
T  1726258 tggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagcaa 1726315  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 43490130 - 43490078
Alignment:
Q  42 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 94  Q
    |||||||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  43490130 tggttaggaacatttgaaacagctgaagcagctgctagagcatatgatgaagc 43490078  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 49532575 - 49532647
Alignment:
Q  36 agggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatga 108  Q
    ||||||||||||||||||||||| || || |||| |||||| | |||||||||| |||| |||||||||||||    
T  49532575 agggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatga 49532647  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 38653206 - 38653154
Alignment:
Q  42 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 94  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||| ||||    
T  38653206 tggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagc 38653154  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 33274316 - 33274270
Alignment:
Q  48 ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 94  Q
    ||||||||||| |||||||| |||||||||| ||| |||||||||||    
T  33274316 ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc 33274270  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 3160291 - 3160343
Alignment:
Q  42 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 94  Q
    ||||||||||| ||||| |||||||||||||| || | ||| |||||||||||    
T  3160291 tggttaggaacttttgatacagctgaagaagctgcaagagcctatgatgaagc 3160343  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 10030004 - 10030050
Alignment:
Q  48 ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 94  Q
    |||||||||||||||||||| |||||||| | ||| |||||||||||    
T  10030004 ggaacatttgaaacagctgaggaagcagcaagagcttatgatgaagc 10030050  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 4038759 - 4038808
Alignment:
Q  42 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatga 91  Q
    ||||||||||| ||||| |||||||||||||| |||| ||| ||||||||    
T  4038759 tggttaggaacttttgatacagctgaagaagctgctagagcttatgatga 4038808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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