View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12050_high_16 (Length: 324)
Name: NF12050_high_16
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 3815073 - 3814776
Alignment:
| Q |
16 |
caaatgtgtttgctaaagttttgtactttatgtttatactataatggttatgtaacaaaaatctaaaatttcaggtggtgcatgtggatatggaaacttg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3815073 |
caaatgtgtttgctaaagttttgtactttatgtttatactataatggttatgtaacaaaaatctaaaatttcaggtggtgcatgtggatatggaaacttg |
3814974 |
T |
|
| Q |
116 |
tatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggtgcatgctatgaaattaaatgtgctagtg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3814973 |
tatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggtgcatgctatgaaattaaatgtgctagtg |
3814874 |
T |
|
| Q |
216 |
acccaaaatggtgtctccatggctccattgttgttactgccactaatttctgtccacctggtggttggtgtgaccctcctaatcaccattttcatctc |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3814873 |
acccaaaatggtgtctccatggctccattgttgttactgccactaatttctgtccacctggtggttggtgtgaccctcctaatcaccattttgatctc |
3814776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 312
Target Start/End: Complemental strand, 2867243 - 2867019
Alignment:
| Q |
88 |
aggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggt |
187 |
Q |
| |
|
|||||| || ||||||||||||||| | ||||| ||||||||||| || |||||||||||| | ||||||||| ||||||||||||| |||||||||||| |
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|
| T |
2867243 |
aggtggggcttgtggatatggaaacctttatagccaaggttatggaacaaatacagcagcattgagcactgcactattcaacaatggattgagttgtggt |
2867144 |
T |
|
| Q |
188 |
gcatgctatgaaattaaatgtgctagtgacccaaaatggtgtctccatggctccattgttgttactgccactaatttctgtccacctggtggttggtgtg |
287 |
Q |
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|
||||| |||||||||||||||| | ||| ||| |||||||| | ||| |||||| | ||||||||||| |||||||||||||||||||||||||||| |
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| T |
2867143 |
gcatgttatgaaattaaatgtgtgaatgatccacaatggtgtaatcctggatccattatagttactgccaccaatttctgtccacctggtggttggtgtg |
2867044 |
T |
|
| Q |
288 |
accctcctaatcaccattttcatct |
312 |
Q |
| |
|
||||||| |||||||||||| |||| |
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|
| T |
2867043 |
accctcccaatcaccattttgatct |
2867019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 22314268 - 22314160
Alignment:
| Q |
84 |
tttcaggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttg |
183 |
Q |
| |
|
||||||| ||||| ||||||||||| ||| | || || ||||| ||||| || ||||||||||| ||||| ||| ||||||||||||| || ||||| |
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|
| T |
22314268 |
tttcaggcggtgcttgtggatatgggaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttg |
22314169 |
T |
|
| Q |
184 |
tggtgcatg |
192 |
Q |
| |
|
||| ||||| |
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|
| T |
22314168 |
tggagcatg |
22314160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 27477661 - 27477548
Alignment:
| Q |
88 |
aggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggt |
187 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||| ||||| || || ||||||||||| |||||||| || |||||||||||||| || ||||| |
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|
| T |
27477661 |
aggtggagcatgtggatatggaaatttgtatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga |
27477562 |
T |
|
| Q |
188 |
gcatgctatgaaat |
201 |
Q |
| |
|
| ||||||||||| |
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|
| T |
27477561 |
tcttgctatgaaat |
27477548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 27488886 - 27488773
Alignment:
| Q |
88 |
aggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggt |
187 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||| ||||| ||||| || || ||||||||||| |||||||| || |||||||||||||| || ||||| |
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|
| T |
27488886 |
aggtggagcatgtggatatggaaatttatatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga |
27488787 |
T |
|
| Q |
188 |
gcatgctatgaaat |
201 |
Q |
| |
|
| ||||||||||| |
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|
| T |
27488786 |
tcttgctatgaaat |
27488773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 11591396 - 11591539
Alignment:
| Q |
88 |
aggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggt |
187 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| || | |||||||| ||||||||| ||| || || ||||| |
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|
| T |
11591396 |
aggtggagcatgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtgga |
11591495 |
T |
|
| Q |
188 |
gcatgctatgaaattaaatgtgctagtgacccaaaatggtgtct |
231 |
Q |
| |
|
||||| | ||| || ||||||| || ||||| ||| |||||||| |
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|
| T |
11591496 |
gcatgttttgagataaaatgtgttaatgaccaaaagtggtgtct |
11591539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 42965924 - 42966069
Alignment:
| Q |
83 |
atttcaggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagtt |
182 |
Q |
| |
|
|||||||| || || ||||| |||||||| |||||||| ||||| ||||| || || || || ||||| |||||||| | ||||||||||| ||||||| |
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|
| T |
42965924 |
atttcaggaggggcttgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagcactgctcttttcaacaatggattgagtt |
42966023 |
T |
|
| Q |
183 |
gtggtgcatgctatgaaattaaatgtgctagtgacccaaaatggtg |
228 |
Q |
| |
|
|||| | ||||| || || |||||| |||||||| |||||||| |
|
|
| T |
42966024 |
gtgggtcttgctacgagatgaaatgtaacagtgaccctaaatggtg |
42966069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 42974359 - 42974500
Alignment:
| Q |
87 |
caggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtgg |
186 |
Q |
| |
|
|||| ||||| ||||| |||||||| |||||||| ||||| ||||| || || || || ||||| || ||||| | ||||||||||| ||||||||||| |
|
|
| T |
42974359 |
caggaggtgcttgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagtactgctcttttcaacaatggattgagttgtgg |
42974458 |
T |
|
| Q |
187 |
tgcatgctatgaaattaaatgtgctagtgacccaaaatggtg |
228 |
Q |
| |
|
| ||||| || || |||||| |||||||| |||||||| |
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|
| T |
42974459 |
gtcttgctacgagatgaaatgtaacagtgaccctaaatggtg |
42974500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 273
Target Start/End: Complemental strand, 32000343 - 32000162
Alignment:
| Q |
92 |
ggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggtgcat |
191 |
Q |
| |
|
||||||||||| |||||||| ||||| | |||||| ||||| || || || |||||||| ||||| || || ||||||||||||||||| ||||| || | |
|
|
| T |
32000343 |
ggtgcatgtggttatggaaatttgtacaatcaaggatatggaacaaacactgcagcactaagcacagctttgttcaacaatggtttgagctgtggggctt |
32000244 |
T |
|
| Q |
192 |
gctatgaaattaaatgtgctagtgacccaaaatggtgtctccatggctccattgttgttactgccactaatttctgtccacc |
273 |
Q |
| |
|
| |||||||| | |||| | |||| |||| |||||| ||| || ||||||||||||||||||| || || |||||||| |
|
|
| T |
32000243 |
gttatgaaatgaggtgtgttggtgatccaagatggtgcaaacatagcaccattgttgttactgccacaaacttttgtccacc |
32000162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 34207929 - 34207826
Alignment:
| Q |
83 |
atttcaggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagtt |
182 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||||||||| || ||||||||| | ||||| ||| |||||||||| |||||||||| |
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|
| T |
34207929 |
atttcaggtggagcatgtggttatggaaatctgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagtt |
34207830 |
T |
|
| Q |
183 |
gtgg |
186 |
Q |
| |
|
|||| |
|
|
| T |
34207829 |
gtgg |
34207826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 270
Target Start/End: Complemental strand, 18301641 - 18301459
Alignment:
| Q |
88 |
aggtggtgcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggt |
187 |
Q |
| |
|
||||||||||||||||||||||||| | || |||||||||||||| || || || || || | ||||| || || ||||||| |||||| || |||||| |
|
|
| T |
18301641 |
aggtggtgcatgtggatatggaaacctatacagtcaaggttatggaacaaacactgctgctttaagcacagctttgttcaacagtggtttaagctgtggt |
18301542 |
T |
|
| Q |
188 |
gcatgctatgaaattaaatgtgctagtgacccaaaatggtgtctccatggctccattgttgttactgccactaatttctgtcc |
270 |
Q |
| |
|
| || | ||| |||| |||||| |||||| ||||||||||| | |||||| ||| | || ||||| |||||||||||||| |
|
|
| T |
18301541 |
tcttgttttgagattaggtgtgctggtgaccgtaaatggtgtcttcctggctctattttggtcactgctactaatttctgtcc |
18301459 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 41491267 - 41491175
Alignment:
| Q |
95 |
gcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggt |
187 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||| ||||||||| | ||||| ||| ||||||||||||| | ||||||||| |
|
|
| T |
41491267 |
gcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaacaatggactaagttgtggt |
41491175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 23858891 - 23858797
Alignment:
| Q |
95 |
gcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggtgc |
189 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||||| || || ||||||||| | |||||||| || |||||||||||||| || |||||||| |
|
|
| T |
23858891 |
gcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcactgctttgttcaacaatggtttaagctgtggtgc |
23858797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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