View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_high_2 (Length: 819)
Name: NF12050_high_2
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 54 - 508
Target Start/End: Complemental strand, 7722904 - 7722448
Alignment:
| Q |
54 |
tctcaactgtcaatttgctc--accttgctgcaacggaactttgcctgtacatactaattatcatacaggtgactaattatatacattaatatgtattgt |
151 |
Q |
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| T |
7722904 |
tctcaactgtcaatttgctctcaccttgctgcaacggaactttgcctgtacatactaattatcatacaggtgactaattatatacattaatatgtattgt |
7722805 |
T |
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| Q |
152 |
gaccaaacataattacaaattcaaacattttcagccacaggcacatttgaaggagacttgatgaggggctctttgatcttgtcattgagtttagaaggag |
251 |
Q |
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| T |
7722804 |
gaccaaacataattacaaattcaaacattttcagccacaggcacatttgaaggagacttgatgaggggctctttgatcttgtcattgagtttagaaggag |
7722705 |
T |
|
| Q |
252 |
aaattgatgatgttttctttgatggatacaacacataatgttgacacatgaaaagaagatcaaagaacatacaaacctgaaaatgtttacaatatacaca |
351 |
Q |
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| T |
7722704 |
aaattgatgatgttttctttgatggatacaacacataatgttgacacatgaaaagaagatcaaagaacatacaaacctgaaaatgtttacaatatacaca |
7722605 |
T |
|
| Q |
352 |
agtaagaaaattaaggtaattttaacttnnnnnnnntgttgtctttatgaccgattaagcaatcgatatttcaacctacattggtgtctaaatttttcgc |
451 |
Q |
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| T |
7722604 |
agtaagaaaattaaggtaattttaacttaaaaaaaatgttgtctttatgaccgattaagcaatcaatttttcaacctacattggtgtctaaatttgtcgc |
7722505 |
T |
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| Q |
452 |
ttaatgaattagtgatcgatttagaaaccaatttgtaaaaatttcctaaacaactag |
508 |
Q |
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| T |
7722504 |
ttaatgaattagtgatcgatttagaaaccaatttgtaaaaatttcctaaacaactag |
7722448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 507 - 808
Target Start/End: Complemental strand, 7721993 - 7721692
Alignment:
| Q |
507 |
agatatcaactcatcaaaattgaaatgaatgaaagagtaaagggaccaattcttaccagagataacaatacttttccaaggttcccagagaaattcaccc |
606 |
Q |
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| T |
7721993 |
agatatcaactcatcaaaattgaaatgaatgaaagagtaaagggaccaattcttaccagagataacaatacttttccaaggttcccagagaaattcaccc |
7721894 |
T |
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| Q |
607 |
aagagtctagaatgnnnnnnngagaagaaatgttatta-attacatgcattgatgcatcaagtcatttggaatgttactataatgtgaatttggaaataa |
705 |
Q |
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| T |
7721893 |
aagagtctagaatgaaaaaa-gagaagaaatgttattatattacatgcattgatgcattaagtcatgtggaatgttaatataatgtgaatttggaaataa |
7721795 |
T |
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| Q |
706 |
agacatactttgatcaattgattgtataaccatctgagcataatttgccattcctccacagaaatcaaggaacacatttccaatgctaaatccatctgtg |
805 |
Q |
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| T |
7721794 |
agacatactttgatcaattgattgtataaccatctgagcataatttgccattcctccacagaaatcaaggaacacatttccaatgctaaatccatctgtg |
7721695 |
T |
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| Q |
806 |
ctc |
808 |
Q |
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||| |
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| T |
7721694 |
ctc |
7721692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 7724376 - 7724341
Alignment:
| Q |
21 |
ggcaagacaatttgctaagcgaagaatcaattctct |
56 |
Q |
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| T |
7724376 |
ggcaagacaatttgctaagcgaagaatcaattctct |
7724341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 808
Target Start/End: Complemental strand, 7738147 - 7738106
Alignment:
| Q |
767 |
aaatcaaggaacacatttccaatgctaaatccatctgtgctc |
808 |
Q |
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| T |
7738147 |
aaatcaaggagaacattgccaatgctaaatccatctgtgctc |
7738106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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