View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12050_high_20 (Length: 290)

Name: NF12050_high_20
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12050_high_20
NF12050_high_20
[»] chr8 (6 HSPs)
chr8 (21-117)||(44553162-44553258)
chr8 (55-117)||(13364117-13364179)
chr8 (21-111)||(22594352-22594442)
chr8 (69-109)||(13463084-13463124)
chr8 (60-99)||(16906410-16906449)
chr8 (60-104)||(9319283-9319327)
[»] chr5 (21 HSPs)
chr5 (21-117)||(24042607-24042703)
chr5 (21-117)||(19797698-19797794)
chr5 (21-117)||(24041772-24041868)
chr5 (22-117)||(13824574-13824669)
chr5 (21-117)||(13823734-13823830)
chr5 (21-117)||(37192400-37192496)
chr5 (21-117)||(38384902-38384998)
chr5 (21-117)||(42766851-42766947)
chr5 (55-117)||(23082606-23082668)
chr5 (21-111)||(30645661-30645751)
chr5 (21-111)||(37191627-37191717)
chr5 (25-111)||(39548534-39548620)
chr5 (21-117)||(42767621-42767717)
chr5 (60-111)||(14347472-14347523)
chr5 (55-117)||(6794707-6794769)
chr5 (21-111)||(28905391-28905481)
chr5 (21-111)||(28941786-28941876)
chr5 (60-117)||(16920077-16920134)
chr5 (21-109)||(23083516-23083604)
chr5 (21-99)||(38385747-38385825)
chr5 (21-108)||(19798657-19798744)
[»] chr2 (20 HSPs)
chr2 (21-117)||(8885692-8885788)
chr2 (21-117)||(8892989-8893085)
chr2 (55-117)||(16330766-16330828)
chr2 (56-117)||(29519227-29519288)
chr2 (60-117)||(12601311-12601368)
chr2 (21-117)||(8029937-8030033)
chr2 (21-117)||(12602525-12602621)
chr2 (60-117)||(28189520-28189577)
chr2 (21-108)||(16329779-16329866)
chr2 (55-117)||(19298497-19298559)
chr2 (55-117)||(20685697-20685759)
chr2 (60-117)||(40469025-40469082)
chr2 (69-117)||(10709292-10709340)
chr2 (21-117)||(11131112-11131208)
chr2 (56-104)||(3093261-3093309)
chr2 (69-109)||(20686609-20686649)
chr2 (69-109)||(28190421-28190461)
chr2 (69-117)||(29519974-29520022)
chr2 (21-104)||(18950770-18950852)
chr2 (69-109)||(40468128-40468168)
[»] chr4 (23 HSPs)
chr4 (21-117)||(26281178-26281274)
chr4 (55-117)||(11108360-11108422)
chr4 (55-117)||(11816682-11816744)
chr4 (21-111)||(53596083-53596173)
chr4 (25-111)||(2734835-2734921)
chr4 (21-99)||(44182596-44182674)
chr4 (21-117)||(43630250-43630346)
chr4 (21-117)||(44183734-44183830)
chr4 (21-117)||(45044402-45044498)
chr4 (21-117)||(45046836-45046932)
chr4 (55-117)||(9087288-9087350)
chr4 (55-117)||(11815929-11815991)
chr4 (55-117)||(31081631-31081693)
chr4 (55-117)||(40680533-40680595)
chr4 (64-117)||(50282860-50282913)
chr4 (21-117)||(26280108-26280203)
chr4 (60-117)||(13631727-13631784)
chr4 (69-109)||(9086375-9086415)
chr4 (55-99)||(50281747-50281791)
chr4 (21-104)||(43629213-43629296)
chr4 (60-98)||(31081407-31081445)
chr4 (55-116)||(13630170-13630231)
chr4 (69-109)||(40681437-40681477)
[»] chr7 (14 HSPs)
chr7 (21-117)||(14682922-14683018)
chr7 (21-117)||(18297188-18297284)
chr7 (21-117)||(14681931-14682027)
chr7 (21-117)||(17278433-17278529)
chr7 (21-117)||(30765702-30765798)
chr7 (60-117)||(25443070-25443127)
chr7 (55-111)||(42753981-42754037)
chr7 (55-117)||(16955998-16956060)
chr7 (55-117)||(25445007-25445068)
chr7 (64-117)||(17238566-17238619)
chr7 (21-117)||(30475098-30475194)
chr7 (23-117)||(30474312-30474406)
chr7 (69-109)||(30766620-30766660)
chr7 (21-99)||(17236098-17236176)
[»] chr3 (10 HSPs)
chr3 (21-117)||(34817365-34817461)
chr3 (21-111)||(54831889-54831979)
chr3 (21-117)||(32305198-32305294)
chr3 (21-99)||(52254337-52254415)
chr3 (55-111)||(17514643-17514699)
chr3 (21-117)||(42541128-42541224)
chr3 (60-110)||(17509537-17509587)
chr3 (60-105)||(46922004-46922049)
chr3 (69-110)||(32304314-32304355)
chr3 (69-110)||(42540245-42540286)
[»] chr1 (24 HSPs)
chr1 (21-117)||(51241758-51241854)
chr1 (21-111)||(24326616-24326706)
chr1 (21-111)||(24332248-24332338)
chr1 (56-117)||(51242905-51242966)
chr1 (21-117)||(967925-968021)
chr1 (21-117)||(29022477-29022573)
chr1 (55-117)||(7964182-7964244)
chr1 (21-99)||(24508244-24508322)
chr1 (21-111)||(29021616-29021706)
chr1 (21-117)||(5805905-5806002)
chr1 (60-117)||(7965437-7965494)
chr1 (60-117)||(31698213-31698270)
chr1 (21-117)||(31697149-31697245)
chr1 (69-117)||(47112176-47112224)
chr1 (21-111)||(16659838-16659928)
chr1 (55-117)||(36142178-36142240)
chr1 (60-117)||(50124529-50124586)
chr1 (55-111)||(38658810-38658866)
chr1 (21-117)||(49652432-49652528)
chr1 (55-110)||(47113049-47113104)
chr1 (65-109)||(35123133-35123177)
chr1 (65-109)||(36143071-36143115)
chr1 (60-111)||(52751497-52751548)
chr1 (60-98)||(1524082-1524120)
[»] scaffold0192 (1 HSPs)
scaffold0192 (55-117)||(14633-14695)
[»] chr6 (10 HSPs)
chr6 (21-117)||(12261418-12261514)
chr6 (60-117)||(10998797-10998854)
chr6 (55-117)||(16146145-16146207)
chr6 (21-111)||(902688-902777)
chr6 (21-117)||(27128878-27128974)
chr6 (64-111)||(901494-901541)
chr6 (55-117)||(8850286-8850348)
chr6 (74-111)||(12587793-12587830)
chr6 (69-109)||(12260528-12260568)
chr6 (69-105)||(27129819-27129855)
[»] scaffold0150 (1 HSPs)
scaffold0150 (21-115)||(38916-39010)
[»] scaffold0202 (2 HSPs)
scaffold0202 (55-111)||(22139-22195)
scaffold0202 (69-109)||(21310-21350)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 44553162 - 44553258
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    ||||||||||||||||||||||||||        |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44553162 tttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggtcccttccgttaaataaatt 44553258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 13364117 - 13364179
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||    
T  13364117 gattgtttgagtattttatttttatccccgttacctgttttggtcccttccgttaaataaatt 13364179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 22594352 - 22594442
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||        |||| |||||||| |||||||||||||| |||||||||||||||| |||| ||||||    
T  22594352 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaaa 22594442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 13463124 - 13463084
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  13463124 tttatctttatctccgttacatgttttggtcccttccgtta 13463084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 16906449 - 16906410
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtc 99  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  16906449 tttgagtactttatatttatctccgttacctgttttggtc 16906410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 9319327 - 9319283
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttc 104  Q
    |||||||| ||||| |||||||| |||||||||||||||| ||||    
T  9319327 tttgagtactttatttttatctctgttacctgttttggtcccttc 9319283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 24042703 - 24042607
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24042703 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggtcccttccgttaaataaatt 24042607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 19797698 - 19797794
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    ||||||||||||||||||||||||||        |||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  19797698 tttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtattttatttttatctccgttacctgttttggtcccttctgttaaataaatt 19797794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 24041772 - 24041868
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| ||||| |||||||||||||||        |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24041772 tttgatatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggtcccttccgttaaataaatt 24041868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 13824669 - 13824574
Alignment:
Q  22 ttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    ||||||||| |||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  13824669 ttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggtccattccgttaaataaatt 13824574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 13823734 - 13823830
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| | |||||||||||||||        |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13823734 tttggtattgctttggtcccttaactaaaaaaaagattgtttaagtattttatctttatctccgttacctgttttggtcccttccgttaaataaatt 13823830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 37192496 - 37192400
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||||| |||||    
T  37192496 tttggtatcgctttggtcccttaactaaaaaaaagattatttgagtactttatatttatctctgttacctgttttggtcccttccgttaaaaaaatt 37192400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 38384902 - 38384998
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| ||||||||||||| |        |||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  38384902 tttggtatcgctttggtcccttaattaaaaaaaagattgtttgagtactttatctttatctccgctacctgttttggtcccttccgttaaaaaaatt 38384998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 42766851 - 42766947
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        |||| ||||||||  |||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  42766851 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacattatatttatctccgttacctgttttggtcccttccgttaaaaaaatt 42766947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 23082606 - 23082668
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  23082606 gattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaaaatt 23082668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 30645751 - 30645661
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||        |||| |||||||| |||||||||||||| |||||||||||||||| |||| ||||||    
T  30645751 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaaa 30645661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 37191627 - 37191717
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||        |||| |||||||| ||||||||||||||  |||||||||||||||||||| ||||||    
T  37191627 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctattacctgttttggtctcttctgttaaa 37191717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 39548620 - 39548534
Alignment:
Q  25 gtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    ||||||||||||||||||||||        |||| |||||||| |||||||| ||||| ||||||||||||||||||||| ||||||    
T  39548620 gtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctctgttacctgttttggtctcttctgttaaa 39548534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 42767717 - 42767621
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||| ||||||        |||| |||||||| ||||||||||||||| ||||||||||||||| |||| |||||| |||||    
T  42767717 tttggtatcgatttggtcctttaactaaaaaaaagattgtttgagtactttatctttatctccattacctgttttggtcccttctgttaaaaaaatt 42767621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 14347472 - 14347523
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||| ||||||||||||||||||||||||||||| | |||||||||||    
T  14347472 tttgagtactttatctttatctccgttacctgttttggccccttccgttaaa 14347523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 6794769 - 6794707
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| |||||||| |||||||||| ||||||||||| ||||||||||| |||||    
T  6794769 gattgtttgagtactttatcttcatctccgttatctgttttggtcccttccgttaaaaaaatt 6794707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 28905481 - 28905391
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||         ||| |||||||| |||||||||||||| |||||||||||||||| |||| ||||||    
T  28905481 tttggtatcgctttggtcccttaactaaaaaaaaaattgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaaa 28905391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 28941876 - 28941786
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||         ||| |||||||| |||||||||||||| |||||||||||||||| |||| ||||||    
T  28941876 tttggtatcgctttggtcccttaactaaaaaaaaaattgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaaa 28941786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 16920077 - 16920134
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| ||||||||||||||| ||||||| ||||||| |||| ||||||||||||    
T  16920077 tttgagtaatttatctttatctccattacctgatttggtcccttctgttaaataaatt 16920134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 23083604 - 23083516
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||||||||||||| |        |||| |||  ||| |||||||||||||| ||||| ||||||||||||||||||||    
T  23083604 tttggtatcgttttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctctgttacatgttttggtctcttccgtta 23083516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 38385825 - 38385747
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtc 99  Q
    |||| ||||| |||||||||||||||        |||| |||||||| |||||||||||||||||||||| ||||||||    
T  38385825 tttgatatcgctttggtcccttaactaaaataaagattgtttgagtactttatctttatctccgttacctattttggtc 38385747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 19798744 - 19798657
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgtt 108  Q
    |||||||||  |||||||||||||||        |||| |||||||| |||||||||||||| |||| |||||| |||| ||||||||    
T  19798744 tttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttatctgtttcggtcccttccgtt 19798657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 8885692 - 8885788
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  8885692 tttggtatcgctttggtcccttaactaaaaaaaagattatttgagtattttatatttatctccgttacctgttttggtcccttccgttaaataaatt 8885788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 8893085 - 8892989
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| | |||||||||||||||        ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  8893085 tttggtattgctttggtcccttaactaaaataaagattatttgggtattttatctttatcttcgttacctattttggtctcttccgttaaataaatt 8892989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 16330828 - 16330766
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  16330828 gattgtttgagtattttatctttatctccgttacctgttttggtcccttctgttaaataaatt 16330766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 29519227 - 29519288
Alignment:
Q  56 attatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  29519227 attatttgagtactttatctttatctccgttacttgttttggtctcttccgttaaaaaaatt 29519288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 12601311 - 12601368
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  12601311 tttgagtattttatctttatcttcgttatctgttttggtcccttccgttaaataaatt 12601368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 8030033 - 8029937
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||  |||||||||||||||        |||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  8030033 tttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaaaatt 8029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 12602621 - 12602525
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        |||| |||||||||||||| |||||||| | ||||||||||||||  ||||||||||||||||    
T  12602621 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatatttatctctgctacctgttttggtcctttccgttaaataaatt 12602525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 28189520 - 28189577
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  28189520 tttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaaaatt 28189577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 16329779 - 16329866
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgtt 108  Q
    |||||||||| |||||||||||||||        |||| |||||||| |||||||||||||| |||| ||||||||||| ||||||||    
T  16329779 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttatctgttttggtcccttccgtt 16329866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 19298559 - 19298497
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||| ||||||||||| |||||    
T  19298559 gattgtttgagtactttatcttcatcaccgttacctgttttggtcccttccgttaaaaaaatt 19298497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 20685697 - 20685759
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||||||| ||||||| |||||    
T  20685697 gattgtttgagtactttatcttcatcaccgttacctgttttggtctctttcgttaaaaaaatt 20685759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 40469082 - 40469025
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| |||||||| |||| ||||||||||||||||| ||||||||||| |||||    
T  40469082 tttgagtactttatcttcatcttcgttacctgttttggtcccttccgttaaaaaaatt 40469025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 10709340 - 10709292
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||||    
T  10709340 tttatcttgatctccgttacatgttttggtcccttccgttaaataaatt 10709292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 11131208 - 11131112
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        |||| ||| |||| ||||| |||||||| ||||||||||||||| ||||| |||||| |||||    
T  11131208 tttggtatcgctttggtcccttaactaaaaaaaagattgtttcagtaatttatatttatctctgttacctgttttggtttcttctgttaaaaaaatt 11131112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 3093261 - 3093309
Alignment:
Q  56 attatttgagtattttatctttatctccgttacctgttttggtctcttc 104  Q
    ||||||||| || ||||| ||||||||||||||||||||||||| ||||    
T  3093261 attatttgactactttatttttatctccgttacctgttttggtcccttc 3093309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 20686649 - 20686609
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  20686649 tttatctttatctccgttacatgttttggtcccttccgtta 20686609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 28190461 - 28190421
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  28190461 tttatctttatctccgttacatgttttggtcccttccgtta 28190421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 29520022 - 29519974
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||||||| |||||||||||||||| |||| |||||| |||||    
T  29520022 tttatctttatctctgttacctgttttggtcccttctgttaaaaaaatt 29519974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 18950770 - 18950852
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttc 104  Q
    |||||||||| |||||||||||||||        |||| |||||||| |||||||||||||  |||||||||||||||| ||||    
T  18950770 tttggtatcgctttggtcccttaactaaaaaaa-gattgtttgagtactttatctttatctatgttacctgttttggtcccttc 18950852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 40468128 - 40468168
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||||| ||| |||||||||| |||||||||    
T  40468128 tttatctttatctccgatacatgttttggtcccttccgtta 40468168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 26281274 - 26281178
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    ||||||||||||||||||||||||||        |||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||    
T  26281274 tttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctattttggtcccttccgttaaataaatt 26281178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 11108360 - 11108422
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  11108360 gattgtttgagtattttatctttacctccgttacctgttttggtcccttccgttaaataaatt 11108422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 11816744 - 11816682
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  11816744 gattgtttgagtattttatctttatctccgttacctgttttggtcccttccgttaaaaaaatt 11816682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 53596173 - 53596083
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    ||||||||||||||||| ||||||||        |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  53596173 tttggtatcgttttggttccttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctgttttggtctcttctgttaaa 53596083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 2734835 - 2734921
Alignment:
Q  25 gtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    ||||||||||||||||||||||        |||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||    
T  2734835 gtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtctcttctgttaaa 2734921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 44182596 - 44182674
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtc 99  Q
    ||||||||||||||||||||||||||        |||| |||||||| |||||||||||||||||||||||||||||||    
T  44182596 tttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctgttttggtc 44182674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 43630346 - 43630250
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||| ||||||        |||| |||||||||||||||||||||||||||||||||||||| | |||  ||||||||||||    
T  43630346 tttggtatcgctttggtcctttaactaaaaaaaagattgtttgagtattttatctttatctccgttacctgttttggccccttatgttaaataaatt 43630250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 44183830 - 44183734
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| |||||||||||||||||        |||| ||| |||| |||||||||||||| ||||||||||||||||  |||||||||| |||||    
T  44183830 tttggtattgttttggtcccttaactaaaaaaaagattgtttaagtactttatctttatctctgttacctgttttggtccattccgttaaaaaaatt 44183734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 45044402 - 45044498
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| ||||||| |||||||        |||| |||||||| ||||||||||||||||||||||||||||||| |||  |||||| |||||    
T  45044402 tttggtatcgctttggtctcttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctgttttggtcccttatgttaaaaaaatt 45044498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 45046932 - 45046836
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    ||||||||||||||||||||||||||        |||| ||||| || ||||||||||| |||||||||| |||||||| |||| |||||| |||||    
T  45046932 tttggtatcgttttggtcccttaactaaaaaaaagattgtttgaatactttatctttatttccgttacctattttggtcccttctgttaaaaaaatt 45046836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 9087350 - 9087288
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| |||||||| |||||||||| ||||||||||| ||||||||||| |||||    
T  9087350 gattctttgagtactttatcttcatctccgttatctgttttggtcccttccgttaaaaaaatt 9087288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 11815929 - 11815991
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| ||||||||  |||||||||||||||||||||||||||||| |||| |||||| |||||    
T  11815929 gattgtttgagtacattatctttatctccgttacctgttttggtcccttctgttaaaaaaatt 11815991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 31081693 - 31081631
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| |||||||||||| ||||||||  ||||||||||||| ||||||||||||    
T  31081693 gattgtttgagtactttatctttatccccgttaccgattttggtctcttctgttaaataaatt 31081631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 40680533 - 40680595
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| |||||||| |||| ||||||||||||||||| ||||||||||| |||||    
T  40680533 gattgtttgagtactttatcttcatcttcgttacctgttttggtcccttccgttaaaaaaatt 40680595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 50282913 - 50282860
Alignment:
Q  64 agtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  50282913 agtactttatctttatctctgttacctgttttggtcccttccgttaaaaaaatt 50282860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 26280108 - 26280203
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||||||||||| |||||||        |||| ||||| |||||| |||||||||||||||||| |||| |||| |||| |||||||||||    
T  26280108 tttggtatcgttttggtctcttaactaaaaaaaagattgtttgaatatttt-tctttatctccgttacctattttagtcttttccattaaataaatt 26280203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 13631784 - 13631727
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| ||||||||||| |||||||||||||||||||  ||| |||||| |||||    
T  13631784 tttgagtaatttatctttatttccgttacctgttttggtcctttctgttaaaaaaatt 13631727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 9086375 - 9086415
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  9086375 tttatctttatctccgttacatgttttggtcccttccgtta 9086415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 50281747 - 50281791
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtc 99  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||    
T  50281747 gattctttgagtactttatctttatctccgttatctgttttggtc 50281791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 43629213 - 43629296
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttc 104  Q
    ||||||||||||||||| ||||||||         ||| |||||||| ||||| |||||||  |||||||||||||||||||||    
T  43629213 tttggtatcgttttggttccttaactaaaaaaaaaattgtttgagtactttatttttatctatgttacctgttttggtctcttc 43629296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 31081407 - 31081445
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggt 98  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  31081407 tttgagtactttatctttatctccgttacctattttggt 31081445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 13630170 - 13630231
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaat 116  Q
    |||| ||| |||| ||||||||||||||| |||||||||||||||  |||| ||||| ||||    
T  13630170 gattgtttaagtactttatctttatctccattacctgttttggtcatttccattaaaaaaat 13630231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 40681477 - 40681437
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||| ||||| |||||||||| |||||||||    
T  40681477 tttatctttatctctgttacatgttttggtcccttccgtta 40681437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 14683018 - 14682922
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||    
T  14683018 tttggtatcgctttggtcccttaactaaaaaaaagattatttgagtattttatctttatctccgttatctgttttggtcccttctgttaaaaaaatt 14682922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 18297188 - 18297284
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||| ||||||||||        |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  18297188 tttggtatcgctttgatcccttaactaaaagaaagattgtttgagtattttatctttatctccgttacctattttggtcccttccgttaaataaatt 18297284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 14681931 - 14682027
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        |||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||||    
T  14681931 tttggtatcgctttggtcccttaactaaaaataagattgtttaagtattttatctttatctccgttacctgttttggtcccttctgttaaaaaaatt 14682027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 17278433 - 17278529
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||  |||||||||||||||        |||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  17278433 tttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaaaatt 17278529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 30765702 - 30765798
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||  |||||||||||||||        |||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  30765702 tttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaaaatt 30765798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 25443070 - 25443127
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  25443070 tttgagtactttatctttatctccgttatctgttttggtcccttctgttaaataaatt 25443127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 42753981 - 42754037
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  42753981 gattgtttgagtactttatctttatctccgttacctgttttggtcccttctgttaaa 42754037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 16955998 - 16956060
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||  |||||| |||||    
T  16955998 gattgtttgagtactttatctttatctccgttacctgttttggtcccttatgttaaaaaaatt 16956060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 25445068 - 25445007
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||| ||| |||||||||||||||||||| |||||||||| |||||||||||||||||    
T  25445068 gattgtttgtgtactttatctttatctccgttacatgttttggtc-cttccgttaaataaatt 25445007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 17238619 - 17238566
Alignment:
Q  64 agtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  17238619 agtaatttatctttgtctccgttacctattttggtctcttccgttaaaaaaatt 17238566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 30475194 - 30475098
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        |||| |||||||| |||||||||||||| |||| || |||||||| |||| |||||| |||||    
T  30475194 tttggtatcgatttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttatctattttggtcccttctgttaaaaaaatt 30475098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 30474312 - 30474406
Alignment:
Q  23 tggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| |||||||||||||||        |||| ||||| || |||||||||||||||||||||| |||||||  |||| |||||| |||||    
T  30474312 tggtatcgctttggtcccttaactaaaaaaaagattgtttgaatactttatctttatctccgttacctattttggttccttctgttaaaaaaatt 30474406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 30766660 - 30766620
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  30766660 tttatctttatctccgttacatgttttggtcccttccgtta 30766620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 17236098 - 17236176
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtc 99  Q
    |||||||||| ||||| |||||||||        |||| |||||||| ||||| |||||||||||||| ||||||||||    
T  17236098 tttggtatcgctttggccccttaactaaaaaaaagattgtttgagtactttatttttatctccgttacatgttttggtc 17236176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 34817365 - 34817461
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    ||||||||| ||||||||||||||||        |||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  34817365 tttggtatcattttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttacctgttttggtcccttccgttaaaaaaatt 34817461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 54831889 - 54831979
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||        |||| ||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  54831889 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatctttatctctgttacctgttttggtcccttcagttaaa 54831979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 32305294 - 32305198
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||  |||||||||||||||        |||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  32305294 tttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaaaatt 32305198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 52254337 - 52254415
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtc 99  Q
    ||||||||||||||||||||||||||        |||| |||||||| ||||||||||||||||||| |||||||||||    
T  52254337 tttggtatcgttttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttatctgttttggtc 52254415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 17514699 - 17514643
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||    
T  17514699 gattgtttgagtactttatctttatctccattacctgttttggtcccttccgttaaa 17514643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 42541224 - 42541128
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||  |||||||||||||||        |||| |||||||| |||||||| ||||| |||||||||||||||| |||| |||||| |||||    
T  42541224 tttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctctgttacctgttttggtcccttctgttaaaaaaatt 42541128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 17509537 - 17509587
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaa 110  Q
    |||| ||| |||||||||||||||||||| |||||| ||||||||||||||    
T  17509537 tttgggtactttatctttatctccgttacatgttttagtctcttccgttaa 17509587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 46922049 - 46922004
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttcc 105  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||    
T  46922049 tttgattattttatatttatctccgttacctgttttggtcccttcc 46922004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 32304314 - 32304355
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgttaa 110  Q
    |||||||||||||||||||| ||||||||||  |||||||||    
T  32304314 tttatctttatctccgttacatgttttggtcctttccgttaa 32304355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 42540245 - 42540286
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgttaa 110  Q
    ||||||||||||||| |||  |||||||||||||||||||||    
T  42540245 tttatctttatctccattaaatgttttggtctcttccgttaa 42540286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 51241758 - 51241854
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||        |||| |||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  51241758 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtattttatctttacttccgttacctgttttggtcccttccgttaaataaatt 51241854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 24326616 - 24326706
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||        ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  24326616 tttggtatcgctttggtcccttaactaaaaaaaagattatttgagtactttatctttatctccgttacctattttggtcccttccgttaaa 24326706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 24332338 - 24332248
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||        ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  24332338 tttggtatcgctttggtcccttaactaaaaaaaagattatttgagtactttatctttatctccgttacctattttggtcccttccgttaaa 24332248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 51242966 - 51242905
Alignment:
Q  56 attatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    ||||||||||||||||||||||||||||||||| |||| |||||  ||||||||||||||||    
T  51242966 attatttgagtattttatctttatctccgttacttgttatggtccattccgttaaataaatt 51242905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 967925 - 968021
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||||||||||||||||||         |||| |||||||| ||||| |||||||  ||||||| ||||||||||||||||||||||||||    
T  967925 tttggtatcgttttggtcccttaacaaaaataaagattgtttgagtactttatttttatctatgttacctattttggtctcttccgttaaataaatt 968021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 29022573 - 29022477
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||  |||||||||||||||        |||| ||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  29022573 tttggtatcactttggtcccttaactaaaaaaaagattgtttaagtactttatctttatctccgttacctgttttggtcccttccgttaaaaaaatt 29022477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 7964182 - 7964244
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||    
T  7964182 gattgtttgaggattttatctttatctccgttacctgttttggtcccttccgtcaaaaaaatt 7964244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 24508244 - 24508322
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtc 99  Q
    ||||||||||||||| ||||||||||        |||||||| |||| |||||||||||||||||||||||||||||||    
T  24508244 tttggtatcgttttgatcccttaactaaaaaaaagattatttaagtactttatctttatctccgttacctgttttggtc 24508322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 29021616 - 29021706
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||        |||| |||||||| |||||||||||||| |||||||||||||||| |||| ||||||    
T  29021616 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaaa 29021706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 5806002 - 5805905
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnn-gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    ||||||||||||||||||||||||||         |||| ||| |||| |||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  5806002 tttggtatcgttttggtcccttaactaaaaaaaaagattttttcagtactttatctttatctctgttatctgttttggtctcttctgttaaataaatt 5805905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 7965494 - 7965437
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||    
T  7965494 tttgaggattttatctttatctccgttacctgttttggtcccttccgtcaaaaaaatt 7965437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 31698270 - 31698213
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||    
T  31698270 tttgagtactttatctttatctccgttagctattttggtctcttctgttaaataaatt 31698213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 31697149 - 31697245
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||| |||||||||||||||         |||||||||||| ||||||||||| || ||||||| |||||||| |||| ||||||||||||    
T  31697149 tttggtatcgctttggtcccttaactaaaaaaaaaattatttgagtactttatctttatatctgttacctattttggtcccttctgttaaataaatt 31697245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 47112176 - 47112224
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  47112176 tttatcttcatctccgttacctgttttggtctcttccgttaaaaaaatt 47112224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 16659928 - 16659838
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||         ||| |||||||| |||||||||||||| |||||||||||||||| |||| ||||||    
T  16659928 tttggtatcgctttggtcccttaactaaaaaaaaaattgtttgagtactttatctttatctctgttacctgttttggtcccttctgttaaa 16659838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 36142178 - 36142240
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||  |||||||||| |||||    
T  36142178 gattgtttaagtactttatctttatctccgttacctgttttggtcctttccgttaaaaaaatt 36142240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 50124586 - 50124529
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    ||||| || |||||||||||||||||||||||||||||||  |||||||||| |||||    
T  50124586 tttgaatactttatctttatctccgttacctgttttggtcctttccgttaaaaaaatt 50124529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 38658866 - 38658810
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||| |||| ||||||    
T  38658866 gattgtttgagtactttatatttatctccgttacctgttttggtcccttctgttaaa 38658810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 49652432 - 49652528
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||  |||||||||||||||        |||| |||||||| |||||||||||| | ||||||| ||||||||| |||||||||| |||||    
T  49652432 tttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatctttatccctgttacctattttggtcttttccgttaaaaaaatt 49652528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 47113104 - 47113049
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaa 110  Q
    ||||||||  ||| |||||||||||||||||||| |||||||||| ||||||||||    
T  47113104 gattattttggtactttatctttatctccgttacatgttttggtcccttccgttaa 47113049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 35123177 - 35123133
Alignment:
Q  65 gtattttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||    
T  35123177 gtattttatctttatcttcgttacatgttttggtcccttccgtta 35123133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 36143115 - 36143071
Alignment:
Q  65 gtattttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||    
T  36143115 gtattttatctttatctccgttacatgttttggtccattccgtta 36143071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 52751548 - 52751497
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||| |||||||||||||| ||||| |||||| ||| |||||||||||    
T  52751548 tttgagtactttatctttatctcagttacttgtttttgtcccttccgttaaa 52751497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 1524082 - 1524120
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggt 98  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  1524082 tttgagtactttatctttatttccgttacctgttttggt 1524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 14695 - 14633
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  14695 gattgtttgagtattttatctttatctctgttacctgttttggtcccttccgttaaataaatt 14633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 12261514 - 12261418
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||  |||||||||||||||        |||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  12261514 tttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctccgttacctgttttggtcccttccgttaaaaaaatt 12261418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 10998797 - 10998854
Alignment:
Q  60 tttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  10998797 tttgagtactttatttttatctccgttacctgttttggtctcttctgttaaaaaaatt 10998854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 16146145 - 16146207
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| |||||||| |||| ||||||||||||||||| ||||||||||| |||||    
T  16146145 gattgtttgagtactttatcttcatcttcgttacctgttttggtcccttccgttaaaaaaatt 16146207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 902777 - 902688
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||||| |||||||||||||||        |||| ||| |||| |||||||||||||||||||||| ||||||||  ||||||||||    
T  902777 tttggtatcgctttggtcccttaactaaaaaaa-gattgtttaagtactttatctttatctccgttacctattttggtcctttccgttaaa 902688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 27128878 - 27128974
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||||||||  |||||||||||||||        |||| |||||||| |||||||| ||||| ||||||||||||||||  ||||||| || |||||    
T  27128878 tttggtatcactttggtcccttaactaaaaaaaagattgtttgagtactttatcttcatctctgttacctgttttggtccattccgttcaaaaaatt 27128974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 901494 - 901541
Alignment:
Q  64 agtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||| |||||||||||||||||||||| ||||||||  ||||||||||    
T  901494 agtactttatctttatctccgttacctattttggtcctttccgttaaa 901541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 8850286 - 8850348
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaatt 117  Q
    |||| |||||||| ||||| |||||||||||||||| |||||||| ||||  ||||| |||||    
T  8850286 gattgtttgagtactttatttttatctccgttacctattttggtcccttctattaaaaaaatt 8850348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 12587830 - 12587793
Alignment:
Q  74 ctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  12587830 ctttatcttcgttacctgttttggtctcttctgttaaa 12587793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 12260528 - 12260568
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||| ||||| |||||||||| |||||||||    
T  12260528 tttatctttatctctgttacatgttttggtcccttccgtta 12260568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 27129855 - 27129819
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttcc 105  Q
    |||||||||||||||||||| |||||||||| |||||    
T  27129855 tttatctttatctccgttacatgttttggtcccttcc 27129819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 38916 - 39010
Alignment:
Q  21 tttggtatcgttttggtcccttaactnnnnnnnngattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaataaa 115  Q
    |||||||||| |||||||||||||||        |||| |||||||| ||||||||||||||||||  |||||||||||  ||| ||||||||||    
T  38916 tttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttatctttatctccgttgtctgttttggtccattctgttaaataaa 39010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 22195 - 22139
Alignment:
Q  55 gattatttgagtattttatctttatctccgttacctgttttggtctcttccgttaaa 111  Q
    |||| |||||||| ||||| |||||||| |||||||||||||||| |||||||||||    
T  22195 gattgtttgagtactttatttttatctctgttacctgttttggtcccttccgttaaa 22139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 21310 - 21350
Alignment:
Q  69 tttatctttatctccgttacctgttttggtctcttccgtta 109  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  21310 tttatctttatctctgttacatgttttggtctcttccgtta 21350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University