View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_high_24 (Length: 262)
Name: NF12050_high_24
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_high_24 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 63526 - 63742
Alignment:
| Q |
16 |
atgaagatcacacttacgatatagccgaataattattctttttccttccaatcaaattaatcaaaacatgttattggctatataataatgtacattg--- |
112 |
Q |
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| T |
63526 |
atgaagatcacacttacgatatagccgaataattattctttttccttccaatcaaattaatcaaaacatgttattggctatataataatgtacattgaaa |
63625 |
T |
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| Q |
113 |
nnnnnnnnnccaccaatatcatatttttcaatcatcatgacaatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaacttaaca |
212 |
Q |
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| T |
63626 |
aaaaaaaaaccaccaacatcatatttttcaatcatcatgaccatccaaaatcgtatcaagagaaacacaaacatcactagaaacaac-acaaacttaaca |
63724 |
T |
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| Q |
213 |
atttgtctccacatcccc |
230 |
Q |
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||||| |||||||||||| |
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| T |
63725 |
atttgactccacatcccc |
63742 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 30302273 - 30302187
Alignment:
| Q |
122 |
ccaccaatatcatatttttcaatcatcatgacaatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaactt |
208 |
Q |
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| T |
30302273 |
ccaccaacatcatatttttcaatcatcatgactatccaaaatcgtatcaagagaaacacaaacatcactaacagcaacaacacactt |
30302187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 30301259 - 30301180
Alignment:
| Q |
154 |
aatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaacttaacaatttgtctccacatccccatc |
233 |
Q |
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||||||||||| |||||| |||||||| |||||| ||||||||||||| | | |||||||| ||||||||||||||||| |
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| T |
30301259 |
aatccaaaatcttatcaaaagaaacactaacatctctagaaacaacaatacatctaacaattggtctccacatccccatc |
30301180 |
T |
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