View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_high_25 (Length: 260)
Name: NF12050_high_25
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 6472996 - 6472770
Alignment:
| Q |
20 |
aggggagccctaacacaagtagccaatctctctggttgggatataaaggataagtaagtagtattttctatgtttgccgcaagttg--atcaacactttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6472996 |
aggggagccctaacacaagtagccaatctctctggttgggatataaaggataagtaagtagtattttctatgtttgccgcaagttgtgatcaacactttt |
6472897 |
T |
|
| Q |
118 |
aagtttatactaacaaaatttcactgaacttttcaattaatttttggttcttgaattgttttatcaattaatctttgttatttatgttcgtggttttcaa |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6472896 |
aagtttatactaacaaaatttcaatgaacttttcaattaatttttggctcttgaattgttttatcaattaatctttgttatttatgttcgtggttttcat |
6472797 |
T |
|
| Q |
218 |
gtgataatttggaatttctattctctg |
244 |
Q |
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||||| ||||||||||||||||||||| |
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| T |
6472796 |
gtgatgatttggaatttctattctctg |
6472770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 13608652 - 13608756
Alignment:
| Q |
20 |
aggggagccctaacacaagtagccaatctctctggttgggatataaaggataagtaagtagtattttctatgtttgccgcaagttgatcaacacttttaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |
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| T |
13608652 |
aggggagccctaacacaagtagccaatctctctggttgggatatgaaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaa |
13608751 |
T |
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| Q |
120 |
gttta |
124 |
Q |
| |
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||||| |
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| T |
13608752 |
gttta |
13608756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 13608867 - 13608954
Alignment:
| Q |
157 |
atttttggttcttgaattgttttatcaattaatctttgttatttatgttcgtggttttcaagtgataatttggaatttctattctctg |
244 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||| ||| ||||| ||||||||||||||| ||||| |
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| T |
13608867 |
atttttggttcttggattgttttatcaattaatctttgttgtttttgtttgtggttgtcatgtgatgatttggaatttctatcctctg |
13608954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 31244634 - 31244738
Alignment:
| Q |
23 |
ggagccctaacacaagtagccaatctctctggttgggatataaaggataagtaagtagtattttctatgtttgccgcaagttgatcaacac-ttttaagt |
121 |
Q |
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||||||||| ||||||||||| | ||||||||||||||| ||| |||| |||||||||| |||||||||||||| ||||| ||||| || |||||||| |
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| T |
31244634 |
ggagccctagcacaagtagccgaactctctggttgggatgtaagggatcagtaagtagtcttttctatgtttgcaacaagtcgatcataactttttaagt |
31244733 |
T |
|
| Q |
122 |
ttata |
126 |
Q |
| |
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||||| |
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| T |
31244734 |
ttata |
31244738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 31244823 - 31244864
Alignment:
| Q |
155 |
taatttttggttcttgaattgttttatcaattaatctttgtt |
196 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31244823 |
taatttttggttcttgaattgttttatcaattaatttttgtt |
31244864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 31159766 - 31159732
Alignment:
| Q |
29 |
ctaacacaagtagccaatctctctggttgggatat |
63 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
31159766 |
ctaacacaagtcgccaatctctctggttgggatat |
31159732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 14724148 - 14724251
Alignment:
| Q |
20 |
aggggagccctaacacaagtagccaatctctctggttgggatataaaggataagtaagtagtattttctatgtttgccgcaagttgatcaacacttttaa |
119 |
Q |
| |
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||||||||| || ||||||||||||||| || || ||| ||||||||||| ||||||| |||||||||||||| || |||| | |||||| ||||||| |
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| T |
14724148 |
aggggagccttagcacaagtagccaatccct--ggctggaatataaaggatcagtaagttgtattttctatgttagcaacaagataatcaacgcttttaa |
14724245 |
T |
|
| Q |
120 |
gtttat |
125 |
Q |
| |
|
|||||| |
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|
| T |
14724246 |
gtttat |
14724251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 17599702 - 17599599
Alignment:
| Q |
20 |
aggggagccctaacacaagtagccaatctctctggttgggatataaaggataagtaagtagtattttctatgtttgccgcaagttgatcaacacttttaa |
119 |
Q |
| |
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||||| ||| |||| ||||||||||||| || || ||| ||||||||||| ||||||| |||||||||||||| || |||| | |||||||||||||| |
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| T |
17599702 |
aggggtgccttaactcaagtagccaatccct--ggctggaatataaaggatcagtaagttgtattttctatgttagcaacaagataatcaacacttttaa |
17599605 |
T |
|
| Q |
120 |
gtttat |
125 |
Q |
| |
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|||||| |
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|
| T |
17599604 |
gtttat |
17599599 |
T |
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