View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12050_high_26 (Length: 249)
Name: NF12050_high_26
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 44645661 - 44645487
Alignment:
| Q |
1 |
tgtaatacaattaactagtgcatcaattcacagtcatgagtgccatcataatttatagatatagatatgctttgtttatagcatcatctctttggtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44645661 |
tgtaatacaattaactagtgcatcaattcacagtcatgagtgccatcataatttatagatatagatatgctttgtttatagcataatctctttggtaaat |
44645562 |
T |
|
| Q |
101 |
gcaattttacttttcctcacggttagatcttatcatcctgtttatttannnnnnnctcttccggaaggcctcaac |
175 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44645561 |
gcaattttacttttcctcacgtttagatcttatcatcctgtttatttatttttttctcttccggaaggcctcaac |
44645487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University