View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_high_4 (Length: 486)
Name: NF12050_high_4
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 47233157 - 47233381
Alignment:
| Q |
56 |
cagaggattcacagaggaagtaagacg---ggtccaataacttggcgaccgctgtcatattggaaggaagagcaggagatacattgacccaaaaagaaag |
152 |
Q |
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| T |
47233157 |
cagaggattcacattggaagtaagacgacgggtccaataacttggcgaccgctgtcatattggaaggaagagcaggagatacattgacccaaaaagaaag |
47233256 |
T |
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| Q |
153 |
gaagaacaaccaacatacattttgtccatgtataaatttgcgagataattgcgctccatcggcccttcatatttgctcaaaagtccatcaatttatctaa |
252 |
Q |
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| T |
47233257 |
gaagaacaaccaacatacattttgtccatgtgtaaatttgcgagataattgcgctccatcggcccttcatatttgctcaaaagtccatcaatttatctaa |
47233356 |
T |
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| Q |
253 |
aaatcacaacgattggtttattttt |
277 |
Q |
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| T |
47233357 |
atatcagaacgattggtttattttt |
47233381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 279 - 486
Target Start/End: Original strand, 47233409 - 47233616
Alignment:
| Q |
279 |
cgatcggtcttttttcagggttgggcaatttcaggtacctaaagagcatccttcaatttgcaatggcaatggcgctcgctcaactgctttcactaatctc |
378 |
Q |
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| T |
47233409 |
cgatcggtcttttttcagggttgagcaatttcaggtacctaaagagcatccttcaatttgcaatggcaaaggcgctcgctcaactgctttcactaatctc |
47233508 |
T |
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| Q |
379 |
ccagccatacccaataactagagaaatggattccttgcagtcaaatagtgactgcagctgaatctcagccatcagattatgttcaatacaacaacaacca |
478 |
Q |
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| T |
47233509 |
ccagccatacccaataactagggaaatggattccttgcagtcaaatagtgactgtagctgaatctcaaccatcagattatgttcaatacaacaacaacca |
47233608 |
T |
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| Q |
479 |
agccttat |
486 |
Q |
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| T |
47233609 |
agccttat |
47233616 |
T |
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