View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_high_8 (Length: 419)
Name: NF12050_high_8
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_high_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 44646132 - 44645711
Alignment:
| Q |
1 |
aaagtattggaagagaagaaagggat---atcaaagaatgaacaagtcagttcgaaagacgaacacggtgaaacttggaggaggagcaaccaccggaaca |
97 |
Q |
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|||||| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646132 |
aaagtactggaagagaagaaagggatcatatcaaagaataaacaagtcaggtcgaaagacgaacacggtgaaacttggaggaggagcaaccaccggaaca |
44646033 |
T |
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| Q |
98 |
aagaagaaatggaggatcaaaatttctcctaagataaaatttccaacaatttcttctcctaagaaatggatggtgtggatgagagactcctatgtgagga |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646032 |
aagaagaaatggaggatcaaaatttctcctaagataaaatttccaacaatttcttctcctaagaaatggatggtgtggatgagagactcctatgtgagga |
44645933 |
T |
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| Q |
198 |
tgatgcttggtttggctaactcaaaggtaatgaatttgactagcttcaatgaccccacaggtggatttgggagggctccacaacccaaggagtacgataa |
297 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
44645932 |
tgatgcttggtttggctaactcgaaggtaatgaatttgactagcttcaatgaccccactggtggatttgggagggctccacaacctaaggagtacgataa |
44645833 |
T |
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| Q |
298 |
taaaatgcttgttcatatgtataactcgttggttgtggctcagggacatttggttccactcgataatttaccatcaaaattgggctcagaaacagcttga |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44645832 |
taaaatgcttgttcatatgtataactcgttggttgtggctcagggacatttggttccactcgataatttaccatcaaaattgggctcaaaaacagcttga |
44645733 |
T |
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| Q |
398 |
aaaaagtttgtttattcccttt |
419 |
Q |
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|||||||||||||||||||||| |
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| T |
44645732 |
aaaaagtttgtttattcccttt |
44645711 |
T |
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