View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12050_low_1 (Length: 1231)
Name: NF12050_low_1
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 1128; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1128; E-Value: 0
Query Start/End: Original strand, 15 - 1217
Target Start/End: Complemental strand, 34371682 - 34370480
Alignment:
| Q |
15 |
cacagagacatgtacattatcttggcttctattctgttggcacaccatttcatctcgtgatgtgaataatatttttatacatttctgatggtcttgagaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34371682 |
cacagagacatgtacattatcttggcttctattctgttggcacaccttttcatctcgtgatgtgaataatatttttatacatttctgatggtcttgagaa |
34371583 |
T |
|
| Q |
115 |
gaaattcctatcaactccaaattaagtgctttccacacatcatctaagactattagcaccttaacattcttctcttcaaattctttaaacctttgaaata |
214 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34371582 |
gaaagtcctatcaactcaaaattaagttctttccacacatcatctaagactattagcaccttaacattcttctcttcaaattctttaaacctttgaaata |
34371483 |
T |
|
| Q |
215 |
tttcccaaccccttccttccaaactctgcccttttaactccaaacctaaaccatcagcaatttgtctttgaatcttctcgtaatcaggattttgggatac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34371482 |
tttcccaaccccttccttccaaactctgcccttttaactccaaacctaaaccatcagcaatttgtctttgaatcttctcgtaatcaggattttgggatac |
34371383 |
T |
|
| Q |
315 |
aacagccatcacaactttatcaaataacttattttctacagttttgataagttctttcacaagtgtggttttccccactccacccatcccacaaatgcca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34371382 |
aacagccatcacaactttatcaaataacttattttctacagttttgatgagttctttcacaagtgtggttttccccactccacccatcccacaaatgcca |
34371283 |
T |
|
| Q |
415 |
atccttttgagttgaccatccttcaacttctctatgagcacttgtataatttggtttctggactccaaactcttgtaattttctatgaaggttgatccaa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34371282 |
atccttttgagttgaccatccttcaacttctctatgagcacttgtataatttggtttctggactccaaactcttgtaattttctatgaaggttgatccaa |
34371183 |
T |
|
| Q |
515 |
gtgctggtgcatccttacggtaggatataagtgaaagttgttttccttcctcgttcaatcttgtaacaacttctattttttcagttgcttgcttacccag |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34371182 |
gtgctggtgcatccttacggtaggatataagtgaaagctgttttccttcctcgttcaatcttgtaacaacttctattttttcagttgcttgcttacccag |
34371083 |
T |
|
| Q |
615 |
tgagtaattgaatgcaaaatttatacactggccccaaaagcacttcttgttcttgttaactttgttttcatagaaactttctaacacagcttcaatttct |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34371082 |
tgagtaattgaatgcaaaatttatacactggccccaaaagcacttcttgttcttgttaactttgttttcatagaaactttctaacacagcttcaatttct |
34370983 |
T |
|
| Q |
715 |
gcttctttagagagccagttcaacacgttacgtggaatttcgtttccttttgtgctttctgcatccacccacccttgcaatgattgtctcaaagaatcca |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34370982 |
gcttctttagagagccagttcaacacgttacgtggaatttcgtttccttttgtgctttctgcatccacccacccttgcaatgattgtctcaaagaatcca |
34370883 |
T |
|
| Q |
815 |
aattattgtgctcttcattcaaattggcaattatatttttgtattggatcatatatttaaattgctttatggtagactccactcccatttctccaagttt |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34370882 |
aattattgtgctcttcattcaaattggcaattatatttttgtattggatcatatatttaaattgctttatgatagactccactcccatttctccaagttt |
34370783 |
T |
|
| Q |
915 |
tgaggcagctccttttggcagctccatacaaaaatccatctttgtttgccttaaaaaccctaaattatcacattgtgcacaataagtgagatgactc-nn |
1013 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34370782 |
tgaggcagctccttttggcagctccatacaaaaatccatctttgtttgccttaaaaaccctaaattatcacattgtgcacaataagtgagatgactcttt |
34370683 |
T |
|
| Q |
1014 |
nnnnnnagatgatcatccatttgtgactaaaagtctcactttggatgaaaaaatggatgttgagctctctatataagtgagattacccatatacctaata |
1113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34370682 |
ttttttagatgatcatccatttgtgactaaaagtctcactttggatgaaaaaatggatgttgagctctctatataagtgagattacccatatacctaata |
34370583 |
T |
|
| Q |
1114 |
acataaattttagggaaatatatggtgtctaatttcattggtgcggaagataataaattcaacttgtgcagttgatgtaactcattgtaataatcctcca |
1213 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
34370582 |
acataaa-tttagggaaatatatggtgtctaatttcattggtgcggaagaaaataaattcaacttgtgcagttgatgtaactcattgtaataatccttca |
34370484 |
T |
|
| Q |
1214 |
aact |
1217 |
Q |
| |
|
|||| |
|
|
| T |
34370483 |
aact |
34370480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 259 - 451
Target Start/End: Original strand, 34555094 - 34555286
Alignment:
| Q |
259 |
cctaaaccatcagcaatttgtctttgaatcttctcgtaatcaggattttgggatacaacagccatcacaactttatcaaataacttattttctacagttt |
358 |
Q |
| |
|
||||||| |||||||||||| ||||| || | || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34555094 |
cctaaacaatcagcaatttgactttggatatacttgtaatcaggattttgggatatcactgccatcacaactttatcaaataacttattttctacagatt |
34555193 |
T |
|
| Q |
359 |
tgataagttctttcacaagtgtggttttccccactccacccatcccacaaatgccaatccttttgagttgaccatccttcaacttctctatga |
451 |
Q |
| |
|
|||| | |||||| || || |||||||| |||||||||||||| ||||| |||| || ||||||| | | ||||||||| |||||||||| |
|
|
| T |
34555194 |
tgatgatttcttttaccagagtggtttttcccactccacccattccacatatgcttattcttttgaacttatcatccttcagtttctctatga |
34555286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 34566859 - 34566954
Alignment:
| Q |
356 |
ttttgataagttctttcacaagtgtggttttccccactccacccatcccacaaatgccaatccttttgagttgaccatccttcaacttctctatga |
451 |
Q |
| |
|
||||||| | ||||||||| | ||||||||| |||||||| ||||||||||| |||| |||| | |||| |||| ||||||| | |||||||||| |
|
|
| T |
34566859 |
ttttgatgacttctttcaccattgtggtttttcccactccgcccatcccacagatgctaatcatattgacttgatcatccttgagtttctctatga |
34566954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 817 - 931
Target Start/End: Original strand, 34555652 - 34555766
Alignment:
| Q |
817 |
ttattgtgctcttcattcaaattggcaattatatttttgtattggatcatatatttaaattgctttatggtagactccactcccatttctccaagttttg |
916 |
Q |
| |
|
|||||||| ||||| ||||| | |||||| || | ||||| ||||||| ||||| ||| ||||| | ||||||| |||| ||| |||||||||||||| |
|
|
| T |
34555652 |
ttattgtgttcttccttcaagtcggcaataatttgtttgtgctggatcacatattcaaactgcttcactgtagactgcactgccaattctccaagttttg |
34555751 |
T |
|
| Q |
917 |
aggcagctccttttg |
931 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
34555752 |
agacagcttcttttg |
34555766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 34292333 - 34292406
Alignment:
| Q |
378 |
tgtggttttccccactccacccatcccacaaatgccaatccttttgagttgaccatccttcaacttctctatga |
451 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| |||| | |||| |||| ||||||| | |||||||||| |
|
|
| T |
34292333 |
tgtggtttttcccactccgcccatcccacaaatgctaatcatattgacttgatcatccttgagtttctctatga |
34292406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 259 - 412
Target Start/End: Complemental strand, 129702 - 129549
Alignment:
| Q |
259 |
cctaaaccatcagcaatttgtctttgaatcttctcgtaatcaggattttgggatacaacagccatcacaactttatcaaataacttattttctacagttt |
358 |
Q |
| |
|
||||||| |||||||||||| || || || |||| |||||| ||||||||||| | || ||||| ||||||||||||||||||| ||||||||||| || |
|
|
| T |
129702 |
cctaaacaatcagcaatttgactctgtatattcttgtaatctggattttgggaaatcactgccattacaactttatcaaataactcattttctacagatt |
129603 |
T |
|
| Q |
359 |
tgataagttctttcacaagtgtggttttccccactccacccatcccacaaatgc |
412 |
Q |
| |
|
|||| |||||||| || | ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
129602 |
tgatgagttctttaaccaatgtggtttttcccactccacccatcccacatatgc |
129549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 601 - 702
Target Start/End: Complemental strand, 129360 - 129259
Alignment:
| Q |
601 |
gcttgcttacccagtgagtaattgaatgcaaaatttatacactggccccaaaagcacttcttgttcttgttaactttgttttcatagaaactttctaaca |
700 |
Q |
| |
|
|||||||| |||| ||||||||| ||| |||||| ||||| || | ||| || ||||||||| | |||||||||| |||||||||||||| ||||| |
|
|
| T |
129360 |
gcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacatttcttgttcattttaactttgtcttcatagaaactttttaaca |
129261 |
T |
|
| Q |
701 |
ca |
702 |
Q |
| |
|
|| |
|
|
| T |
129260 |
ca |
129259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 346 - 451
Target Start/End: Original strand, 15896524 - 15896629
Alignment:
| Q |
346 |
ttttctacagttttgataagttctttcacaagtgtggttttccccactccacccatcccacaaatgccaatccttttgagttgaccatccttcaacttct |
445 |
Q |
| |
|
||||||| |||||||| | ||||||||| ||||||||||| || ||||| |||||||||||||||| |||| |||||| |||| ||||||| | ||||| |
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|
| T |
15896524 |
ttttctattgttttgatgacttctttcaccagtgtggtttttcctactccgcccatcccacaaatgctaatcattttgacttgatcatccttgagcttct |
15896623 |
T |
|
| Q |
446 |
ctatga |
451 |
Q |
| |
|
|||||| |
|
|
| T |
15896624 |
ctatga |
15896629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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